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GEO accession:
Sample GSM466829
Query DataSets for GSM466829
Status
Public on Mar 25, 2010
Title
Parental MDA-MB-231, biological rep1
Sample type
RNA
Source name
parental MDA-MB-231 cells
Organism
Homo sapiens
Characteristics
cell line lineage: parental MDA-MB-231-1
Growth protocol
Subconfluent, in DMEM containing 10% FBS
Extracted molecule
total RNA
Extraction protocol
RNA was isolated by using USB RNA extraction kit
Label
Biotin
Label protocol
Biotin
Hybridization protocol
Standard Affymetrix protocol
Scan protocol
Standard Affymetrix protocol
Description
Gene expression data parental MDA-MB-231 cells
Data processing
MAS 5
Submission date
Oct 30, 2009
Last update date
Mar 25, 2010
Contact name
Mi-Young Kim
E-mail(s)
kimm@mskcc.org
Organization name
MSKCC
Street address
1275 York Ave
City
New York
State/province
NY
ZIP/Postal code
10021
Country
USA
Platform ID
GPL571
Series (1)
GSE18833
Expression profiles of MDA-MB-231, MDA-231 S1a and S1b
Data table header descriptions
ID_REF
VALUE
MAS 5.0 signal
ABS_CALL
indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
523.292
P
0.000224668
AFFX-BioB-M_at
617.009
P
4.42873e-05
AFFX-BioB-3_at
437.155
P
8.14279e-05
AFFX-BioC-5_at
1259.59
P
5.16732e-05
AFFX-BioC-3_at
1570.6
P
4.42873e-05
AFFX-BioDn-5_at
2752.36
P
4.42873e-05
AFFX-BioDn-3_at
5781.47
P
6.02111e-05
AFFX-CreX-5_at
13883.7
P
5.16732e-05
AFFX-CreX-3_at
18385.1
P
4.42873e-05
AFFX-DapX-5_at
425.888
P
0.00010954
AFFX-DapX-M_at
716.298
P
0.000753643
AFFX-DapX-3_at
920.525
P
0.00010954
AFFX-LysX-5_at
42.3198
P
0.0219019
AFFX-LysX-M_at
59.5733
A
0.0726999
AFFX-LysX-3_at
200.644
P
0.000753643
AFFX-PheX-5_at
74.5582
P
0.0012475
AFFX-PheX-M_at
93.6769
P
0.00110197
AFFX-PheX-3_at
102.807
P
0.000662269
AFFX-ThrX-5_at
107.624
P
0.000445901
AFFX-ThrX-M_at
178.088
P
6.02111e-05
Total number of rows:
22277
Table truncated, full table size
675 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM466829_MDA231_parenral-1_HG_U133A_2.CEL.gz
1.9 Mb
(ftp)
(http)
CEL
GSM466829_MDA231_parenral-1_HG_U133A_2.mas5.CHP.gz
202.5 Kb
(ftp)
(http)
CHP
Processed data included within Sample table
Processed data provided as supplementary file
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