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GEO accession:
Sample GSM466831
Query DataSets for GSM466831
Status
Public on Mar 25, 2010
Title
MDA-MB-231 S1a, biological rep1
Sample type
RNA
Source name
Isolated seeder cell popuation1
Organism
Homo sapiens
Characteristics
cell line lineage: MDA-MB-231-S1a-1
Growth protocol
Subconfluent, in DMEM containing 10% FBS
Extracted molecule
total RNA
Extraction protocol
RNA was isolated by using USB RNA extraction kit
Label
Biotin
Label protocol
Biotin
Hybridization protocol
Standard Affymetrix protocol
Scan protocol
Standard Affymetrix protocol
Description
Gene expression data MDA-MB-231-S1a cells
Data processing
MAS 5
Submission date
Oct 30, 2009
Last update date
Mar 25, 2010
Contact name
Mi-Young Kim
E-mail(s)
kimm@mskcc.org
Organization name
MSKCC
Street address
1275 York Ave
City
New York
State/province
NY
ZIP/Postal code
10021
Country
USA
Platform ID
GPL571
Series (1)
GSE18833
Expression profiles of MDA-MB-231, MDA-231 S1a and S1b
Data table header descriptions
ID_REF
VALUE
MAS 5.0 signal
ABS_CALL
indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
524.586
P
0.000126798
AFFX-BioB-M_at
782.364
P
4.42873e-05
AFFX-BioB-3_at
433.645
P
4.42873e-05
AFFX-BioC-5_at
1246.1
P
5.16732e-05
AFFX-BioC-3_at
1813.33
P
4.42873e-05
AFFX-BioDn-5_at
3036.44
P
4.42873e-05
AFFX-BioDn-3_at
5628.56
P
5.16732e-05
AFFX-CreX-5_at
12889.2
P
5.16732e-05
AFFX-CreX-3_at
16136.8
P
4.42873e-05
AFFX-DapX-5_at
958.37
P
5.16732e-05
AFFX-DapX-M_at
1718.98
P
0.000146581
AFFX-DapX-3_at
2190.16
P
4.42873e-05
AFFX-LysX-5_at
66.8108
P
0.000224668
AFFX-LysX-M_at
128.415
P
0.0032123
AFFX-LysX-3_at
268.947
P
0.00010954
AFFX-PheX-5_at
196.477
P
5.16732e-05
AFFX-PheX-M_at
246.076
P
6.02111e-05
AFFX-PheX-3_at
218.276
P
5.16732e-05
AFFX-ThrX-5_at
277.161
P
8.14279e-05
AFFX-ThrX-M_at
383.126
P
4.42873e-05
Total number of rows:
22277
Table truncated, full table size
676 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM466831_MDA231_S1a-1_HG_U133A_2.CEL.gz
2.0 Mb
(ftp)
(http)
CEL
GSM466831_MDA231_S1a-1_HG_U133A_2.mas5.CHP.gz
202.0 Kb
(ftp)
(http)
CHP
Processed data included within Sample table
Processed data provided as supplementary file
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