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Sample GSM4676 Query DataSets for GSM4676
Status Public on Apr 01, 2003
Title NMC_Rat_5k_cDNA_Ser2-61
Sample type RNA
 
Channel 1
Source name Liver from ciprofibrate dosed rat
Organism Rattus norvegicus
Extracted molecule total RNA
 
Channel 2
Source name Liver from control rats
Organism Rattus norvegicus
Extracted molecule total RNA
 
 
Description This represents hybridization of total liver RNA from one of four female Fischer rats given ciprofibrate (50 mg/kg body weight per day for 60 days) vs. total RNA pool from five control rats.
 
Submission date Mar 08, 2003
Last update date May 27, 2005
Contact name Fekadu Yadetie
E-mail(s) fekadu.yadetie@mbi.uib.no
Organization name Norwegian University of Science and Technology
Department Cancer Research and Molecular Medicine
Lab Physiology
Street address Olav Kyrres gt 3
City Trondheim
ZIP/Postal code N-7489 Trondheim
Country Norway
 
Platform ID GPL264
Series (1)
GSE335 Ciprofibrate stimulated gene expression in rats

Data table header descriptions
ID_REF
CH1_TOP Sample 1 (Cy5) target location in image - top
CH1_LEFT Sample 1 (Cy5) target location in image - left
CH1_BOTTOM Sample 1 (Cy5) target location in image - bottom
CH1_RIGHT Sample 1 (Cy5) target location in image - right
CH1_RAW Sample 1 (Cy5) Total Intensity
CH1_MEAN Sample 1 (Cy5) Mean Intensity
CH1_SD Sample 1 (Cy5) Standard Deviation
CH1_AREA Sample 1 (Cy5) Spot Area in Pixels
CH1_BKD_MEAN Sample 1 (Cy5) Background Mean
CH1_BKD_SD Sample 1 (Cy5) Background Standard Deviation
CH2_TOP Sample 2 (Cy3) target location in image - top
CH2_LEFT Sample 2 (Cy3) target location in image - left
CH2_BOTTOM Sample 2 (Cy3) target location in image - bottom
CH2_RIGHT Sample 2 (Cy3) target location in image - right
CH2_RAW Sample 2 (Cy3) Total Intensity
CH2_MEAN Sample 2 (Cy3) Mean Intensity
CH2_SD Sample 2 (Cy3) Standard Deviation
CH2_AREA Sample 2 (Cy3) Spot Area in Pixels
CH2_BKD_MEAN Sample 2 (Cy3) Background Mean
CH2_BKD_SD Sample 2 (Cy3) Background Standard Deviation
UNION_AREA Spot Union Area (area common to both channels) in Pixels
RATIO Sample 1 (Cy5) to Sample 2 (Cy3) Raw Ratio
VALUE log ratio of PRE_VALUE
CONF_LEVEL Confidence Level (%)
LOWER_LIMIT Confidence Interval - Lower Bound - Raw Ratio
UPPER_LIMIT Confidence Interval - Upper Bound - Raw Ratio
M Normalization Factor
CV Coefficient of Variance
PRE_VALUE Sample 1 (Cy5) to Sample 2 (Cy3) Calibrated (normalized) Ratio

Data table
ID_REF CH1_TOP CH1_LEFT CH1_BOTTOM CH1_RIGHT CH1_RAW CH1_MEAN CH1_SD CH1_AREA CH1_BKD_MEAN CH1_BKD_SD CH2_TOP CH2_LEFT CH2_BOTTOM CH2_RIGHT CH2_RAW CH2_MEAN CH2_SD CH2_AREA CH2_BKD_MEAN CH2_BKD_SD UNION_AREA RATIO VALUE CONF_LEVEL LOWER_LIMIT UPPER_LIMIT M CV PRE_VALUE
1 533 140 555 162 46337 252 120 119 99 40 533 140 555 162 39963 215 97 121 88 39 140 1.172 -0.0594843 99.000 0.836 2.160 1.344 0.125 0.872
2 533 162 555 184 1936558 13258 4671 146 98 39 533 162 555 184 698293 4730 1687 146 85 38 153 2.803 0.3193143 99.000 0.836 2.160 1.344 0.125 2.086
3 533 185 555 207 3341678 22793 8059 146 95 37 533 185 555 207 2124957 14471 5294 145 83 37 154 1.575 0.0689283 99.000 0.836 2.160 1.344 0.125 1.172
4 533 208 555 230 1694976 9481 5796 144 95 37 533 208 555 230 1093252 6095 3716 185 82 37 185 1.556 0.0637093 99.000 0.836 2.160 1.344 0.125 1.158
5 533 230 555 252 813187 5152 1545 156 94 37 533 230 555 252 423869 2654 791 158 81 36 163 1.941 0.1598683 99.000 0.836 2.160 1.344 0.125 1.445
6 533 253 555 275 707693 4444 1359 158 93 37 533 253 555 275 418349 2601 839 160 81 36 164 1.709 0.1044873 99.000 0.836 2.160 1.344 0.125 1.272
7 533 276 555 298 237811 1413 451 160 92 36 533 276 555 298 129433 739 266 152 80 37 166 1.913 0.1535103 99.000 0.836 2.160 1.344 0.125 1.424
8 533 298 555 320 40222 188 84 134 93 37 533 298 555 320 32203 147 82 85 78 36 151 1.276 -0.0222763 99.000 0.836 2.160 1.344 0.125 0.950
9 533 321 555 343 79278 478 180 136 92 37 533 321 555 343 47374 262 103 133 79 37 147 1.826 0.1332193 99.000 0.836 2.160 1.344 0.125 1.359
10 533 344 555 366 58513 256 99 156 91 36 533 344 555 366 43725 182 75 138 77 35 177 1.404 0.0191163 99.000 0.836 2.160 1.344 0.125 1.045
11 533 367 555 389 35525 165 72 112 90 36 533 367 555 389 30174 138 74 91 79 37 147 1.200 -0.0491493 99.000 0.836 2.160 1.344 0.125 0.893
12 533 389 555 411 1 1 0 0 93 38 533 389 555 411 1 1 0 0 79 37 0 1.000 -0.1284273 99.000 0.836 2.160 1.344 0.125 0.744
13 533 412 555 434 210055 1270 541 150 94 38 533 412 555 434 126969 744 280 156 81 37 162 1.709 0.1044873 99.000 0.836 2.160 1.344 0.125 1.272
14 533 435 555 457 71245 355 124 154 93 37 533 435 555 457 40349 174 77 147 80 37 167 2.048 0.1829853 99.000 0.836 2.160 1.344 0.125 1.524
15 533 457 555 479 1 1 0 0 95 39 533 457 555 479 1 1 0 0 77 36 0 1.000 -0.1284273 99.000 0.836 2.160 1.344 0.125 0.744
16 533 480 555 502 38004 166 78 117 94 39 533 480 555 502 36112 167 75 119 80 38 154 0.995 -0.1301823 99.000 0.836 2.160 1.344 0.125 0.741
17 533 503 555 525 393254 2477 891 150 93 38 533 503 555 525 243635 1513 437 159 79 37 161 1.637 0.0860043 99.000 0.836 2.160 1.344 0.125 1.219
18 533 526 555 548 494275 3318 1081 149 91 36 533 526 555 548 447936 3008 889 149 81 38 153 1.103 -0.0856573 99.000 0.836 2.160 1.344 0.125 0.821
19 533 548 555 570 287719 1840 397 155 91 36 533 548 555 570 187630 1177 254 157 82 37 157 1.563 0.0655803 99.000 0.836 2.160 1.344 0.125 1.163
20 533 571 555 593 1 1 0 0 91 38 533 571 555 593 1 1 0 0 81 36 0 1.000 -0.1284273 99.000 0.836 2.160 1.344 0.125 0.744

Total number of rows: 7688

Table truncated, full table size 1100 Kbytes.




Supplementary data files not provided
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