|
| Status |
Public on Sep 24, 2020 |
| Title |
T-ALL 8 |
| Sample type |
SRA |
| |
|
| Source name |
T-ALL blasts
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: T-ALL blasts
disease state: NKX2-1 T-ALL
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
genomic DNA was extracted and purified using the Qiagen DNeasy Kit according to standard instructions
500ng of DNA was used for TruSeq Methyl Capture EPIC sequencing (Illumina).
|
| |
|
| Library strategy |
OTHER |
| Library source |
genomic |
| Library selection |
other |
| Instrument model |
Illumina HiSeq 3000 |
| |
|
| Data processing |
Library strategy: EPICseq
Reads were trimmed using TrimGalore (v0.4.5) and aligned with Bismark (v0.20.0) on the human genome version hg38.
Normalized β values were extracted using the methylkit package in R
Genome_build: hg38
|
| |
|
| Submission date |
Jul 29, 2020 |
| Last update date |
Sep 24, 2020 |
| Contact name |
Juliette Roels |
| E-mail(s) |
roels.juliette@gene.com
|
| Phone |
6505807476
|
| Organization name |
Genentech
|
| Street address |
1 DNA Way
|
| City |
South San Francisco |
| State/province |
CA |
| ZIP/Postal code |
94080 |
| Country |
USA |
| |
|
| Platform ID |
GPL21290 |
| Series (2) |
| GSE155335 |
Aging of preleukemic thymocytes drives CpG island hypermethylation in T-cell acute lymphoblastic leukemia [EPICseq_14TALL] |
| GSE155339 |
Aging of preleukemic thymocytes drives CpG island hypermethylation in T-cell acute lymphoblastic leukemia |
|
| Relations |
| BioSample |
SAMN15666509 |
| SRA |
SRX8842786 |
