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Sample GSM47 Query DataSets for GSM47
Status Public on Jan 24, 2001
Title NHGRI_UACC-930
Sample type RNA
 
Channel 1
Source name melanoma, small intestine
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name NHGRI_Melanoma_Ref
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Biopsy location: small intestine
Patient sex: female
Patient age: 35
Passage number: 4
p16 mutation status: WT
Invasive ability: 4.8 +/- 0.3%
Vasculogenic mimicry: +/-
Gel contraction: -
Cell motility: ND
Scratch wound (%): 50

See http://www.nhgri.nih.gov/DIR/Microarray/Nature_paper.pdf
and http://www.nhgri.nih.gov/DIR/Microarray/Melanoma_Supplement/index.html
 
Submission date Jan 09, 2001
Last update date May 27, 2005
Contact name Michael Bittner
E-mail(s) mbittner@nhgri.nih.gov
Phone 301-496-7980
Fax 301-402-3241
URL http://www.nhgri.nih.gov/Intramural_research/People/bittnerm.html
Organization name NHGRI, NIH
Department Cancer Genetics Branch
Street address
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL7
Series (1)
GSE1 NHGRI_Melanoma_class

Data table header descriptions
ID_REF
CH1_TARGET_TOP Sample 1 (Red Channel) target location in image - top
CH1_TARGET_LT Sample 1 (Red Channel) target location in image - left
CH1_TARGET_BOT Sample 1 (Red Channel) target location in image - bottom
CH1_TARGET_RT Sample 1 (Red Channel) target location in image - right
CH1_RAW Sample 1 (Red Channel) Total Intensity
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_AREA Sample 1 (Red Channel) Area
CH1_BKD_MEAN Sample 1 (Red Channel) Mean Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_TARGET_TOP Sample 2 (Green Channel) target location in image - top
CH2_TARGET_LT Sample 2 Green Channel) target location in image - left
CH2_TARGET_BOT Sample 2 Green Channel) target location in image - bottom
CH2_TARGET_RT Sample 2 Green Channel) target location in image - right
CH2_RAW Sample 2 Green Channel) Total Intensity
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH2_SD Sample 2 Green Channel) Standard Deviation
CH2_AREA Sample 2 Green Channel) Area
CH2_BKD_MEAN Sample 2 Green Channel) Mean Background Level
CH2_BKD_SD Sample 2 Green Channel) Background Standard Deviation
UNION_AREA Union Area
RATIO Raw Ratio
VALUE log ratio of PRE_VALUE
CONF_LEVEL Confidence Level - fixed at 99%
CONF_LOW Confidence Interval - Lower Bound - Raw Ratio
CONF_UP Confidence Interval - Upper Bound - Raw Ratio
NORM_FACTOR M-value
CV Coefficient of variance
PRE_VALUE Calibrated Ratio

Data table
ID_REF CH1_TARGET_TOP CH1_TARGET_LT CH1_TARGET_BOT CH1_TARGET_RT CH1_RAW CH1_MEAN CH1_SD CH1_AREA CH1_BKD_MEAN CH1_BKD_SD CH2_TARGET_TOP CH2_TARGET_LT CH2_TARGET_BOT CH2_TARGET_RT CH2_RAW CH1_MEAN CH2_SD CH2_AREA CH2_BKD_MEAN CH2_BKD_SD UNION_AREA RATIO VALUE CONF_LEVEL CONF_LOW CONF_UP NORM_FACTOR CV PRE_VALUE
1 82 157 100 175 5764561 48901.4 19415.3 123 1225.2 226.8 82 157 100 175 6099748 50644.4 19071.9 117 2396.9 259.3 123 0.966 -0.0861863 99.000 0.541 2.565 1.178 0.191 0.820
2 697 165 715 183 468598 3717.5 1661.0 96 1375.9 218.4 697 165 715 183 583082 3723.5 1574.9 91 2614.3 237.0 100 0.998 -0.0721173 99.000 0.541 2.565 1.178 0.191 0.847
3 118 157 136 175 88063 1986.9 1210.1 26 1158.2 221.1 118 157 136 175 142482 2718.3 1788.9 35 2370.3 251.4 36 0.731 -0.2076083 99.000 0.541 2.565 1.178 0.191 0.620
4 733 165 751 183 1344977 9145.8 3993.3 134 1444.6 239.2 733 165 751 183 1372343 8075.2 3448.7 107 2730.6 266.9 135 1.133 -0.0172773 99.000 0.541 2.565 1.178 0.191 0.961
5 155 157 173 175 946539 10417.5 5756.0 90 1125.7 198.6 155 157 173 175 799952 7450.1 5304.7 76 2305.4 209.2 90 1.398 0.0744513 99.000 0.541 2.565 1.178 0.191 1.187
6 769 164 787 182 7476258 53800.0 15543.2 143 1579.7 298.5 769 164 787 182 6305868 43932.4 19482.1 143 2777.7 246.6 143 1.225 0.0166163 99.000 0.541 2.565 1.178 0.191 1.039
7 191 157 209 175 3087807 27943.4 17393.1 114 1186.8 213.8 191 157 209 175 1895523 15509.6 10609.6 86 2372.7 206.6 114 1.802 0.1844073 99.000 0.541 2.565 1.178 0.191 1.529
8 805 164 823 182 6823669 51103.6 17487.0 137 1793.1 393.8 805 164 823 182 5957363 43200.3 18247.9 128 2980.8 373.2 137 1.183 0.0017343 99.000 0.541 2.565 1.178 0.191 1.004
9 228 156 246 174 903368 9407.6 4561.6 93 1220.3 211.0 228 156 246 174 1010117 9485.7 4867.4 83 2398.0 225.5 93 0.992 -0.0746883 99.000 0.541 2.565 1.178 0.191 0.842
10 841 164 859 182 877863 7607.1 3348.0 103 1537.3 247.4 841 164 859 182 939435 7017.0 3076.3 84 2768.8 233.0 104 1.084 -0.0362123 99.000 0.541 2.565 1.178 0.191 0.920
11 264 156 282 174 1131520 10265.5 5101.6 105 1280.7 211.6 264 156 282 174 2258144 20586.6 10786.0 106 2455.7 220.4 106 0.499 -0.3736603 99.000 0.541 2.565 1.178 0.191 0.423
12 878 164 896 182 238450 10841.1 6344.4 26 1708.9 317.6 878 164 896 182 196267 7551.7 4868.4 26 2778.1 248.1 27 1.436 0.0860043 99.000 0.541 2.565 1.178 0.191 1.219
13 91 778 109 796 2459652 17143.2 8156.7 142 1212.4 244.9 91 778 109 796 1630319 9782.2 5403.8 116 2384.4 232.0 142 1.752 0.1726033 99.000 0.541 2.565 1.178 0.191 1.488
14 689 775 707 793 3816263 33960.9 18931.5 116 1374.9 221.8 689 775 707 793 2759547 23022.8 14045.3 101 2528.6 243.7 116 1.475 0.0976043 99.000 0.541 2.565 1.178 0.191 1.252
15 127 778 145 796 6749149 43794.5 20869.8 158 1199.8 242.5 127 778 145 796 4316983 26347.1 14554.5 137 2432.8 262.6 158 1.662 0.1495273 99.000 0.541 2.565 1.178 0.191 1.411
16 725 775 743 793 878092 9995.6 4376.4 84 1408.2 238.0 725 775 743 793 887031 8959.8 4100.7 78 2560.0 221.8 85 1.116 -0.0236503 99.000 0.541 2.565 1.178 0.191 0.947
17 164 778 182 796 3297589 23551.5 12819.3 141 1242.4 255.1 164 778 182 796 2462360 16129.9 9560.0 126 2384.1 232.4 141 1.460 0.0930713 99.000 0.541 2.565 1.178 0.191 1.239
18 762 775 780 793 2418562 24766.1 11107.6 100 1522.6 331.9 762 775 780 793 1576995 14507.8 7436.0 90 2633.5 263.9 100 1.707 0.1610683 99.000 0.541 2.565 1.178 0.191 1.449
19 200 778 218 796 1972881 14616.3 7406.5 132 1294.0 289.6 200 778 218 796 2258506 15729.2 8093.9 120 2484.6 293.2 132 0.929 -0.1029233 99.000 0.541 2.565 1.178 0.191 0.789
20 798 774 816 792 1674173 21408.6 9645.9 81 1525.3 258.7 798 774 816 792 1690146 20481.9 9467.2 76 2670.8 253.3 81 1.045 -0.0520763 99.000 0.541 2.565 1.178 0.191 0.887

Total number of rows: 8192

Table truncated, full table size 1360 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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