|
| Status |
Public on Oct 22, 2010 |
| Title |
Prognatous_38d_P3 |
| Sample type |
RNA |
| |
|
| Source name |
38 days old prognathous sea bass heads
|
| Organism |
Dicentrarchus labrax |
| Characteristics |
tissue: whole heads
age: 38 days old
condition: Deformed (Prognatous)
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Extracted according to Qiagen RNeasy MiniKit protocol for tissue samples.
|
| Label |
Cy3
|
| Label protocol |
Amplified and labeled according to Agilent One-Color Microarray-Based Gene Expression Analysis protocol.
|
| |
|
| Hybridization protocol |
Hybridized according to Agilent One-Color Microarray-Based Gene Expression Analysis protocol.
|
| Scan protocol |
Array was scanned according to standard Agilent protocol at a resolution of 5 microns modifying default setting to scan the slide twice at two different sensitivity settings (XDRHi 100% and XDRLo 10%).
|
| Description |
Pool of five (5) heads dissected from prognatous individuas and stored in RNAlater at -20°C
|
| Data processing |
Data processed with FeatureExtraction v9.5 and quantile normalized using R2.6.1 statistical software. In the Sample Tables, null corresponds to missing spot; empty values correspond to control spots not included in the normalization.
|
| |
|
| Submission date |
Nov 16, 2009 |
| Last update date |
Aug 01, 2016 |
| Contact name |
Serena Ferraresso |
| E-mail(s) |
serena.ferraresso@unipd.it
|
| Phone |
+39 049 8272506
|
| Organization name |
University of Padova
|
| Department |
Dept of Comparative Biomedicine and Food Science
|
| Street address |
Viale dell'UniversitÃ
|
| City |
Legnaro (PD) |
| State/province |
Padova |
| ZIP/Postal code |
35020 |
| Country |
Italy |
| |
|
| Platform ID |
GPL9663 |
| Series (1) |
| GSE19041 |
Analysis of gene expression profiles on 38 days-old sea bass heads |
|
| Relations |
| Reanalyzed by |
GSM2257205 |
