NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM472989 Query DataSets for GSM472989
Status Public on Oct 31, 2011
Title Heat-Inactivated Dengue Virus-Exposed Cell Responses R2
Sample type RNA
 
Channel 1
Source name Heat-inactivated dengue virus-exposed cells
Organism Aedes aegypti
Characteristics cell line: Aag2
treatment: heat-inactivated dengue virus infection
Treatment protocol Heat-inactivated dengue virus infection.
Extracted molecule total RNA
Extraction protocol QIAGEN
Label Cy5
Label protocol Agilent
 
Channel 2
Source name Naive cells
Organism Aedes aegypti
Characteristics cell line: Aag2
treatment: mock infection
Treatment protocol Naive Cells
Extracted molecule total RNA
Extraction protocol QIAGEN
Label Cy3
Label protocol Agilent
 
 
Hybridization protocol Agilent
Scan protocol GenePix Axon
Data processing GenePix
 
Submission date Nov 18, 2009
Last update date Oct 31, 2011
Contact name George Dimopoulos
E-mail(s) gdimopo1@jhu.edu
Phone 443 28 70128
Organization name Johns Hopkins School of Public Health
Department Molecular Microbiology and Immunology
Street address 615 N. Wolfe Street
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
 
Platform ID GPL4877
Series (1)
GSE33274 Dengue virus inhibits immune responses in Aedes aegypti cells

Data table header descriptions
ID_REF
F635 Median AS IN GENEPIX GPR
F635 Mean AS IN GENEPIX GPR
F635 SD AS IN GENEPIX GPR
F635 CV AS IN GENEPIX GPR
B635 AS IN GENEPIX GPR
B635 Median AS IN GENEPIX GPR
B635 Mean AS IN GENEPIX GPR
B635 SD AS IN GENEPIX GPR
B635 CV AS IN GENEPIX GPR
% > B635+1SD AS IN GENEPIX GPR
% > B635+2SD AS IN GENEPIX GPR
F635 % Sat. AS IN GENEPIX GPR
F532 Median AS IN GENEPIX GPR
F532 Mean AS IN GENEPIX GPR
F532 SD AS IN GENEPIX GPR
F532 CV AS IN GENEPIX GPR
B532 AS IN GENEPIX GPR
B532 Median AS IN GENEPIX GPR
B532 Mean AS IN GENEPIX GPR
B532 SD AS IN GENEPIX GPR
B532 CV AS IN GENEPIX GPR
% > B532+1SD AS IN GENEPIX GPR
% > B532+2SD AS IN GENEPIX GPR
F532 % Sat. AS IN GENEPIX GPR
Ratio of Medians (635/532) Ratio of Medians
Ratio of Means (635/532) AS IN GENEPIX GPR
Median of Ratios (635/532) AS IN GENEPIX GPR
Mean of Ratios (635/532) AS IN GENEPIX GPR
Ratios SD (635/532) AS IN GENEPIX GPR
Rgn Ratio (635/532) AS IN GENEPIX GPR
Rgn R2 (635/532) AS IN GENEPIX GPR
F Pixels AS IN GENEPIX GPR
B Pixels AS IN GENEPIX GPR
Circularity AS IN GENEPIX GPR
Sum of Medians (635/532) AS IN GENEPIX GPR
Sum of Means (635/532) AS IN GENEPIX GPR
VALUE Log Ratio (635/532)
F635 Median - B635 AS IN GENEPIX GPR
F532 Median - B532 AS IN GENEPIX GPR
F635 Mean - B635 AS IN GENEPIX GPR
F532 Mean - B532 AS IN GENEPIX GPR
F635 Total Intensity AS IN GENEPIX GPR
F532 Total Intensity AS IN GENEPIX GPR
SNR 635 AS IN GENEPIX GPR
SNR 532 AS IN GENEPIX GPR
Flags AS IN GENEPIX GPR
Normalize AS IN GENEPIX GPR
Autoflag AS IN GENEPIX GPR

Data table
ID_REF F635 Median F635 Mean F635 SD F635 CV B635 B635 Median B635 Mean B635 SD B635 CV % > B635+1SD % > B635+2SD F635 % Sat. F532 Median F532 Mean F532 SD F532 CV B532 B532 Median B532 Mean B532 SD B532 CV % > B532+1SD % > B532+2SD F532 % Sat. Ratio of Medians (635/532) Ratio of Means (635/532) Median of Ratios (635/532) Mean of Ratios (635/532) Ratios SD (635/532) Rgn Ratio (635/532) Rgn R2 (635/532) F Pixels B Pixels Circularity Sum of Medians (635/532) Sum of Means (635/532) VALUE F635 Median - B635 F532 Median - B532 F635 Mean - B635 F532 Mean - B532 F635 Total Intensity F532 Total Intensity SNR 635 SNR 532 Flags Normalize Autoflag
AEG_V1.0 3422 3228 953 29 45 45 50 24 48 99 99 0 3775 3548 1060 29 33 33 36 16 44 99 98 0 0.902 0.906 0.899 0.919 1.224 0.903 0.983 120 585 100 7119 6698 -0.148 3377 3742 3183 3515 387410 425706 132.417 219.5 0 0 0
AEG_V1.1 176 183 71 38 43 43 47 23 48 98 94 0 176 185 69 37 32 32 36 18 50 99 97 0 0.924 0.915 0.878 0.892 1.784 0.943 0.677 120 590 100 277 293 -0.115 133 144 140 153 21945 22255 5.913 8.278 0 0 0
AEG_V1.10 70 78 78 100 42 42 46 23 50 51 28 0 57 64 41 64 32 32 35 16 45 60 40 0 1.12 1.125 1.113 1.08 3.561 2.838 0.165 120 701 100 53 68 0.163 28 25 36 32 9418 7688 1.391 1.813 0 0 0
AEG_V1.100 73 75 35 46 44 44 49 24 48 51 32 0 72 70 36 51 34 34 37 18 48 65 53 0 0.763 0.861 0.758 1.08 4.407 2.84 0.018 52 392 100 67 67 -0.39 29 38 31 36 3874 3649 1.083 1.833 0 0 0
AEG_V1.1000 160 199 136 68 45 45 58 52 89 67 55 0 138 174 122 70 39 39 48 39 81 82 59 0 1.162 1.141 1.041 0.962 2.176 1.214 0.754 52 329 100 214 289 0.216 115 99 154 135 10362 9070 2.712 3.231 0 0 0
AEG_V1.10000 500 483 159 32 47 47 51 24 47 95 95 0 467 443 154 34 34 34 37 18 48 98 96 0 1.046 1.066 1.04 1.072 1.555 1.065 0.879 120 591 100 886 845 0.065 453 433 436 409 57997 53127 18 22.556 0 0 0
AEG_V1.10001 231 246 146 59 47 47 52 25 48 86 80 0 201 206 124 60 33 33 37 18 48 84 82 0 1.095 1.15 1.224 1.182 1.852 1.228 0.734 120 566 100 352 372 0.131 184 168 199 173 29551 24769 7.76 9.389 0 0 0
AEG_V1.10002 56 67 34 50 51 51 56 29 51 34 12 0 70 75 32 42 41 41 46 26 56 59 25 0 0.172 0.471 0.757 0.999 4.664 0.937 0.068 32 232 100 34 50 -2.536 5 29 16 34 2159 2401 0.379 1.115 0 0 0
AEG_V1.10003 1596 1543 586 37 44 44 49 24 48 97 96 0 1782 1693 628 37 35 35 38 18 47 96 95 0 0.888 0.904 0.902 0.942 1.41 0.904 0.961 120 575 100 3299 3157 -0.171 1552 1747 1499 1658 185216 203168 62.25 91.944 0 0 0
AEG_V1.10004 958 810 449 55 46 46 54 31 57 81 80 0 833 688 367 53 35 35 40 25 62 82 80 0 1.143 1.17 1.143 1.119 1.695 1.208 0.937 120 692 100 1710 1417 0.193 912 798 764 653 97228 82520 24.387 25.92 0 0 0
AEG_V1.10005 1039 887 494 55 47 47 52 36 69 84 81 0 963 815 441 54 32 32 37 23 62 85 82 0 1.066 1.073 1.058 1.06 1.517 1.073 0.942 120 541 100 1923 1623 0.092 992 931 840 783 106435 97841 23.194 33.826 0 0 0
AEG_V1.10006 356 352 112 31 45 45 49 24 48 98 97 0 263 271 92 33 34 34 37 17 45 99 99 0 1.358 1.295 1.344 1.282 1.675 1.321 0.79 120 610 100 540 544 0.442 311 229 307 237 42258 32475 12.625 13.765 0 0 0
AEG_V1.10007 79 89 53 59 43 43 48 22 45 62 40 0 72 81 46 56 33 33 37 18 48 78 53 0 0.923 0.958 1.164 1.015 2.847 1.237 0.231 120 542 100 75 94 -0.115 36 39 46 48 10690 9756 1.864 2.444 0 0 0
AEG_V1.10008 201 310 298 96 46 46 50 25 50 84 70 0 191 244 212 86 36 36 39 17 43 80 78 0 1 1.269 1.212 1.173 2.468 1.366 0.881 120 577 100 310 472 0 155 155 264 208 37176 29273 10.4 12.059 0 0 0
AEG_V1.10009 55 59 28 47 44 44 48 23 47 30 10 0 48 50 23 46 32 32 36 18 50 41 18 0 0.688 0.833 1.139 1.111 3.592 3.28 0.033 120 682 100 27 33 -0.541 11 16 15 18 7126 6004 0.478 0.778 0 0 0
AEG_V1.1001 996 883 404 45 48 48 60 55 91 89 87 0 860 746 352 47 34 34 45 50 111 88 87 0 1.148 1.173 1.196 1.249 1.477 1.162 0.946 120 600 100 1774 1547 0.199 948 826 835 712 105923 89465 14.964 14.02 0 0 0
AEG_V1.10010 582 531 236 44 48 48 58 115 198 86 84 0 482 431 192 44 34 34 46 140 304 84 79 0 1.192 1.217 1.247 1.296 1.563 1.236 0.894 120 643 100 982 880 0.253 534 448 483 397 63675 51675 4.113 2.75 0 0 0
AEG_V1.10011 1123 950 470 49 45 45 51 27 52 91 85 0 1225 1049 514 48 37 37 41 23 56 88 87 0 0.907 0.894 0.892 0.913 1.786 0.896 0.954 120 576 100 2266 1917 -0.14 1078 1188 905 1012 113973 125882 33.296 43.826 0 0 0
AEG_V1.10012 1852 1629 636 39 48 48 53 27 50 92 90 0 1588 1430 592 41 33 33 37 17 45 95 95 0 1.16 1.132 1.152 1.146 1.689 1.121 0.966 120 617 100 3359 2978 0.214 1804 1555 1581 1397 195445 171588 58.37 81.941 0 0 0
AEG_V1.10013 707 701 447 63 47 47 52 28 53 92 90 0 480 468 259 55 35 35 40 24 60 88 87 0 1.483 1.51 1.501 1.604 1.652 1.596 0.888 120 657 100 1105 1087 0.569 660 445 654 433 84173 56192 23.179 17.833 0 0 0

Total number of rows: 21495

Table truncated, full table size 4233 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap