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GEO accession:
Sample GSM472992
Query DataSets for GSM472992
Status
Public on Oct 31, 2011
Title
Dengue Virus-Infected Cell Responses R2
Sample type
RNA
Channel 1
Source name
Dengue-virus-infected cells
Organism
Aedes aegypti
Characteristics
cell line: Aag2
treatment: dengue virus infection
Treatment protocol
Dengue virus infection.
Extracted molecule
total RNA
Extraction protocol
QIAGEN
Label
Cy5
Label protocol
Agilent
Channel 2
Source name
Naive cells
Organism
Aedes aegypti
Characteristics
cell line: Aag2
treatment: mock infection
Treatment protocol
Naive Cells
Extracted molecule
total RNA
Extraction protocol
QIAGEN
Label
Cy3
Label protocol
Agilent
Hybridization protocol
Agilent
Scan protocol
GenePix Axon
Data processing
GenePix
Submission date
Nov 18, 2009
Last update date
Oct 31, 2011
Contact name
George Dimopoulos
E-mail(s)
gdimopo1@jhu.edu
Phone
443 28 70128
Organization name
Johns Hopkins School of Public Health
Department
Molecular Microbiology and Immunology
Street address
615 N. Wolfe Street
City
Baltimore
State/province
MD
ZIP/Postal code
21205
Country
USA
Platform ID
GPL4877
Series (1)
GSE33274
Dengue virus inhibits immune responses in Aedes aegypti cells
Data table header descriptions
ID_REF
F635 Median
AS IN GENEPIX GPR
F635 Mean
AS IN GENEPIX GPR
F635 SD
AS IN GENEPIX GPR
F635 CV
AS IN GENEPIX GPR
B635
AS IN GENEPIX GPR
B635 Median
AS IN GENEPIX GPR
B635 Mean
AS IN GENEPIX GPR
B635 SD
AS IN GENEPIX GPR
B635 CV
AS IN GENEPIX GPR
% > B635+1SD
AS IN GENEPIX GPR
% > B635+2SD
AS IN GENEPIX GPR
F635 % Sat.
AS IN GENEPIX GPR
F532 Median
AS IN GENEPIX GPR
F532 Mean
AS IN GENEPIX GPR
F532 SD
AS IN GENEPIX GPR
F532 CV
AS IN GENEPIX GPR
B532
AS IN GENEPIX GPR
B532 Median
AS IN GENEPIX GPR
B532 Mean
AS IN GENEPIX GPR
B532 SD
AS IN GENEPIX GPR
B532 CV
AS IN GENEPIX GPR
% > B532+1SD
AS IN GENEPIX GPR
% > B532+2SD
AS IN GENEPIX GPR
F532 % Sat.
AS IN GENEPIX GPR
Ratio of Medians (635/532)
Ratio of Medians
Ratio of Means (635/532)
AS IN GENEPIX GPR
Median of Ratios (635/532)
AS IN GENEPIX GPR
Mean of Ratios (635/532)
AS IN GENEPIX GPR
Ratios SD (635/532)
AS IN GENEPIX GPR
Rgn Ratio (635/532)
AS IN GENEPIX GPR
Rgn R2 (635/532)
AS IN GENEPIX GPR
F Pixels
AS IN GENEPIX GPR
B Pixels
AS IN GENEPIX GPR
Circularity
AS IN GENEPIX GPR
Sum of Medians (635/532)
AS IN GENEPIX GPR
Sum of Means (635/532)
AS IN GENEPIX GPR
VALUE
Log Ratio (635/532)
F635 Median - B635
AS IN GENEPIX GPR
F532 Median - B532
AS IN GENEPIX GPR
F635 Mean - B635
AS IN GENEPIX GPR
F532 Mean - B532
AS IN GENEPIX GPR
F635 Total Intensity
AS IN GENEPIX GPR
F532 Total Intensity
AS IN GENEPIX GPR
SNR 635
AS IN GENEPIX GPR
SNR 532
AS IN GENEPIX GPR
Flags
AS IN GENEPIX GPR
Normalize
AS IN GENEPIX GPR
Autoflag
AS IN GENEPIX GPR
Data table
ID_REF
F635 Median
F635 Mean
F635 SD
F635 CV
B635
B635 Median
B635 Mean
B635 SD
B635 CV
% > B635+1SD
% > B635+2SD
F635 % Sat.
F532 Median
F532 Mean
F532 SD
F532 CV
B532
B532 Median
B532 Mean
B532 SD
B532 CV
% > B532+1SD
% > B532+2SD
F532 % Sat.
Ratio of Medians (635/532)
Ratio of Means (635/532)
Median of Ratios (635/532)
Mean of Ratios (635/532)
Ratios SD (635/532)
Rgn Ratio (635/532)
Rgn R2 (635/532)
F Pixels
B Pixels
Circularity
Sum of Medians (635/532)
Sum of Means (635/532)
VALUE
F635 Median - B635
F532 Median - B532
F635 Mean - B635
F532 Mean - B532
F635 Total Intensity
F532 Total Intensity
SNR 635
SNR 532
Flags
Normalize
Autoflag
AEG_V1.0
3250
3088
737
23
63
63
70
40
57
100
99
0
8528
8103
1712
21
52
52
58
33
56
100
100
0
0.376
0.376
0.378
0.373
1.145
0.376
0.981
120
559
100
11663
11076
-1.411
3187
8476
3025
8051
370540
972395
75.45
243.788
0
0
0
AEG_V1.1
207
212
89
41
65
65
71
41
57
88
71
0
376
369
142
38
53
53
59
35
59
95
93
0
0.44
0.465
0.436
0.413
2.355
0.427
0.474
120
590
100
465
463
-1.186
142
323
147
316
25479
44320
3.439
8.857
0
0
0
AEG_V1.10
114
135
82
60
59
59
68
40
58
62
38
0
171
179
96
53
58
58
65
42
64
77
65
0
0.487
0.628
0.624
0.663
3.515
0.747
0.837
120
689
100
168
197
-1.039
55
113
76
121
16148
21477
1.675
2.714
-50
0
0
AEG_V1.100
77
81
37
45
65
65
74
43
58
19
5
0
92
104
59
56
58
58
65
42
64
44
25
0
0.353
0.348
0.391
0.345
3.819
0.489
0.015
52
392
100
46
62
-1.503
12
34
16
46
4224
5393
0.163
0.929
0
0
0
AEG_V1.1000
116
120
56
46
70
70
79
43
54
50
28
0
129
138
66
47
60
60
69
43
62
65
42
0
0.667
0.641
0.869
0.723
5.137
0.414
0.038
52
329
100
115
128
-0.585
46
69
50
78
6244
7182
0.953
1.605
0
0
0
AEG_V1.10000
481
460
198
43
65
65
73
40
54
93
92
0
998
896
358
39
54
54
62
36
58
96
91
0
0.441
0.469
0.486
0.47
1.76
0.457
0.824
120
575
100
1360
1237
-1.182
416
944
395
842
55206
107521
9.675
23.167
0
0
0
AEG_V1.10001
142
153
77
50
71
71
76
42
55
64
47
0
214
218
99
45
59
59
66
39
59
90
82
0
0.458
0.516
0.548
0.515
2.723
0.532
0.296
120
582
100
226
241
-1.126
71
155
82
159
18413
26162
1.833
3.897
0
0
0
AEG_V1.10002
104
118
63
53
78
78
90
56
62
37
12
0
96
119
78
65
74
74
91
69
75
28
12
0
1.182
0.889
1.008
1.372
5.068
0.788
0.15
32
231
100
48
85
0.241
26
22
40
45
3786
3798
0.5
0.406
0
0
0
AEG_V1.10003
1555
1508
508
33
64
64
70
40
57
100
97
0
4210
3949
1269
32
49
49
57
34
59
99
98
0
0.358
0.37
0.381
0.382
1.377
0.366
0.95
120
576
100
5652
5344
-1.481
1491
4161
1444
3900
180922
473823
35.95
114.471
0
0
0
AEG_V1.10004
870
833
285
34
69
69
80
51
63
96
93
0
1668
1561
535
34
62
62
76
61
80
99
97
0
0.499
0.51
0.499
0.504
1.34
0.497
0.909
120
692
100
2407
2263
-1.004
801
1606
764
1499
99973
187358
14.765
24.344
0
0
0
AEG_V1.10005
1197
1166
371
31
67
67
73
41
56
100
99
0
2173
2086
560
26
56
56
63
36
57
98
98
0
0.534
0.541
0.54
0.544
1.594
0.542
0.925
120
553
100
3247
3129
-0.906
1130
2117
1099
2030
139922
250297
26.659
56.194
0
0
0
AEG_V1.10006
362
366
137
37
64
64
73
42
57
96
95
0
525
520
182
35
56
56
61
35
57
98
95
0
0.635
0.651
0.634
0.638
1.663
0.638
0.727
120
610
100
767
766
-0.654
298
469
302
464
43929
62374
6.976
13.114
0
0
0
AEG_V1.10007
104
121
80
66
65
65
71
38
53
50
25
0
145
163
84
51
54
54
61
37
60
80
57
0
0.429
0.514
0.596
0.564
3.195
0.635
0.183
120
573
100
130
165
-1.222
39
91
56
109
14570
19593
1.316
2.757
0
0
0
AEG_V1.10008
132
141
70
49
65
65
72
39
54
68
41
0
173
184
73
39
54
54
60
33
55
93
80
0
0.563
0.585
0.757
0.599
3.129
0.583
0.171
120
563
100
186
206
-0.829
67
119
76
130
16878
22055
1.769
3.758
0
0
0
AEG_V1.10009
141
374
810
216
64
64
71
43
60
63
45
0
230
537
1239
230
55
55
64
49
76
79
65
0
0.44
0.643
0.578
0.556
2.393
0.661
0.871
120
679
100
252
792
-1.184
77
175
310
482
44862
64454
7.047
9.653
-50
0
0
AEG_V1.1001
934
903
305
33
69
69
79
43
54
99
97
0
1752
1658
425
25
57
57
67
47
70
100
99
0
0.51
0.521
0.501
0.488
1.465
0.525
0.9
120
600
100
2560
2435
-0.971
865
1695
834
1601
108374
198929
19.163
33.851
0
0
0
AEG_V1.10010
763
693
313
45
73
73
79
43
54
90
89
0
980
873
378
43
60
60
67
41
61
90
89
0
0.75
0.763
0.756
0.749
1.547
0.788
0.884
120
633
100
1610
1433
-0.415
690
920
620
813
83125
104725
14.279
19.659
-50
0
0
AEG_V1.10011
1266
1185
448
37
70
70
77
41
53
95
95
0
2307
2196
760
34
58
58
64
36
56
97
97
0
0.532
0.522
0.509
0.51
1.886
0.522
0.936
120
575
100
3445
3253
-0.911
1196
2249
1115
2138
142168
263555
27.024
59.222
0
0
0
AEG_V1.10012
1859
1803
509
28
69
69
78
42
53
99
98
0
4024
3785
1039
27
53
53
61
37
60
100
100
0
0.451
0.465
0.46
0.464
1.205
0.46
0.961
120
613
100
5761
5466
-1.15
1790
3971
1734
3732
216367
454202
41.071
100.649
0
0
0
AEG_V1.10013
588
577
232
40
68
68
75
41
54
96
94
0
719
728
257
35
59
59
64
36
56
95
95
0
0.788
0.761
0.789
0.761
1.715
0.762
0.809
120
642
100
1180
1178
-0.344
520
660
509
669
69248
87356
12.244
18.444
-50
0
0
Total number of rows:
21495
Table truncated, full table size
4320 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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