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Sample GSM472992 Query DataSets for GSM472992
Status Public on Oct 31, 2011
Title Dengue Virus-Infected Cell Responses R2
Sample type RNA
 
Channel 1
Source name Dengue-virus-infected cells
Organism Aedes aegypti
Characteristics cell line: Aag2
treatment: dengue virus infection
Treatment protocol Dengue virus infection.
Extracted molecule total RNA
Extraction protocol QIAGEN
Label Cy5
Label protocol Agilent
 
Channel 2
Source name Naive cells
Organism Aedes aegypti
Characteristics cell line: Aag2
treatment: mock infection
Treatment protocol Naive Cells
Extracted molecule total RNA
Extraction protocol QIAGEN
Label Cy3
Label protocol Agilent
 
 
Hybridization protocol Agilent
Scan protocol GenePix Axon
Data processing GenePix
 
Submission date Nov 18, 2009
Last update date Oct 31, 2011
Contact name George Dimopoulos
E-mail(s) gdimopo1@jhu.edu
Phone 443 28 70128
Organization name Johns Hopkins School of Public Health
Department Molecular Microbiology and Immunology
Street address 615 N. Wolfe Street
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
 
Platform ID GPL4877
Series (1)
GSE33274 Dengue virus inhibits immune responses in Aedes aegypti cells

Data table header descriptions
ID_REF
F635 Median AS IN GENEPIX GPR
F635 Mean AS IN GENEPIX GPR
F635 SD AS IN GENEPIX GPR
F635 CV AS IN GENEPIX GPR
B635 AS IN GENEPIX GPR
B635 Median AS IN GENEPIX GPR
B635 Mean AS IN GENEPIX GPR
B635 SD AS IN GENEPIX GPR
B635 CV AS IN GENEPIX GPR
% > B635+1SD AS IN GENEPIX GPR
% > B635+2SD AS IN GENEPIX GPR
F635 % Sat. AS IN GENEPIX GPR
F532 Median AS IN GENEPIX GPR
F532 Mean AS IN GENEPIX GPR
F532 SD AS IN GENEPIX GPR
F532 CV AS IN GENEPIX GPR
B532 AS IN GENEPIX GPR
B532 Median AS IN GENEPIX GPR
B532 Mean AS IN GENEPIX GPR
B532 SD AS IN GENEPIX GPR
B532 CV AS IN GENEPIX GPR
% > B532+1SD AS IN GENEPIX GPR
% > B532+2SD AS IN GENEPIX GPR
F532 % Sat. AS IN GENEPIX GPR
Ratio of Medians (635/532) Ratio of Medians
Ratio of Means (635/532) AS IN GENEPIX GPR
Median of Ratios (635/532) AS IN GENEPIX GPR
Mean of Ratios (635/532) AS IN GENEPIX GPR
Ratios SD (635/532) AS IN GENEPIX GPR
Rgn Ratio (635/532) AS IN GENEPIX GPR
Rgn R2 (635/532) AS IN GENEPIX GPR
F Pixels AS IN GENEPIX GPR
B Pixels AS IN GENEPIX GPR
Circularity AS IN GENEPIX GPR
Sum of Medians (635/532) AS IN GENEPIX GPR
Sum of Means (635/532) AS IN GENEPIX GPR
VALUE Log Ratio (635/532)
F635 Median - B635 AS IN GENEPIX GPR
F532 Median - B532 AS IN GENEPIX GPR
F635 Mean - B635 AS IN GENEPIX GPR
F532 Mean - B532 AS IN GENEPIX GPR
F635 Total Intensity AS IN GENEPIX GPR
F532 Total Intensity AS IN GENEPIX GPR
SNR 635 AS IN GENEPIX GPR
SNR 532 AS IN GENEPIX GPR
Flags AS IN GENEPIX GPR
Normalize AS IN GENEPIX GPR
Autoflag AS IN GENEPIX GPR

Data table
ID_REF F635 Median F635 Mean F635 SD F635 CV B635 B635 Median B635 Mean B635 SD B635 CV % > B635+1SD % > B635+2SD F635 % Sat. F532 Median F532 Mean F532 SD F532 CV B532 B532 Median B532 Mean B532 SD B532 CV % > B532+1SD % > B532+2SD F532 % Sat. Ratio of Medians (635/532) Ratio of Means (635/532) Median of Ratios (635/532) Mean of Ratios (635/532) Ratios SD (635/532) Rgn Ratio (635/532) Rgn R2 (635/532) F Pixels B Pixels Circularity Sum of Medians (635/532) Sum of Means (635/532) VALUE F635 Median - B635 F532 Median - B532 F635 Mean - B635 F532 Mean - B532 F635 Total Intensity F532 Total Intensity SNR 635 SNR 532 Flags Normalize Autoflag
AEG_V1.0 3250 3088 737 23 63 63 70 40 57 100 99 0 8528 8103 1712 21 52 52 58 33 56 100 100 0 0.376 0.376 0.378 0.373 1.145 0.376 0.981 120 559 100 11663 11076 -1.411 3187 8476 3025 8051 370540 972395 75.45 243.788 0 0 0
AEG_V1.1 207 212 89 41 65 65 71 41 57 88 71 0 376 369 142 38 53 53 59 35 59 95 93 0 0.44 0.465 0.436 0.413 2.355 0.427 0.474 120 590 100 465 463 -1.186 142 323 147 316 25479 44320 3.439 8.857 0 0 0
AEG_V1.10 114 135 82 60 59 59 68 40 58 62 38 0 171 179 96 53 58 58 65 42 64 77 65 0 0.487 0.628 0.624 0.663 3.515 0.747 0.837 120 689 100 168 197 -1.039 55 113 76 121 16148 21477 1.675 2.714 -50 0 0
AEG_V1.100 77 81 37 45 65 65 74 43 58 19 5 0 92 104 59 56 58 58 65 42 64 44 25 0 0.353 0.348 0.391 0.345 3.819 0.489 0.015 52 392 100 46 62 -1.503 12 34 16 46 4224 5393 0.163 0.929 0 0 0
AEG_V1.1000 116 120 56 46 70 70 79 43 54 50 28 0 129 138 66 47 60 60 69 43 62 65 42 0 0.667 0.641 0.869 0.723 5.137 0.414 0.038 52 329 100 115 128 -0.585 46 69 50 78 6244 7182 0.953 1.605 0 0 0
AEG_V1.10000 481 460 198 43 65 65 73 40 54 93 92 0 998 896 358 39 54 54 62 36 58 96 91 0 0.441 0.469 0.486 0.47 1.76 0.457 0.824 120 575 100 1360 1237 -1.182 416 944 395 842 55206 107521 9.675 23.167 0 0 0
AEG_V1.10001 142 153 77 50 71 71 76 42 55 64 47 0 214 218 99 45 59 59 66 39 59 90 82 0 0.458 0.516 0.548 0.515 2.723 0.532 0.296 120 582 100 226 241 -1.126 71 155 82 159 18413 26162 1.833 3.897 0 0 0
AEG_V1.10002 104 118 63 53 78 78 90 56 62 37 12 0 96 119 78 65 74 74 91 69 75 28 12 0 1.182 0.889 1.008 1.372 5.068 0.788 0.15 32 231 100 48 85 0.241 26 22 40 45 3786 3798 0.5 0.406 0 0 0
AEG_V1.10003 1555 1508 508 33 64 64 70 40 57 100 97 0 4210 3949 1269 32 49 49 57 34 59 99 98 0 0.358 0.37 0.381 0.382 1.377 0.366 0.95 120 576 100 5652 5344 -1.481 1491 4161 1444 3900 180922 473823 35.95 114.471 0 0 0
AEG_V1.10004 870 833 285 34 69 69 80 51 63 96 93 0 1668 1561 535 34 62 62 76 61 80 99 97 0 0.499 0.51 0.499 0.504 1.34 0.497 0.909 120 692 100 2407 2263 -1.004 801 1606 764 1499 99973 187358 14.765 24.344 0 0 0
AEG_V1.10005 1197 1166 371 31 67 67 73 41 56 100 99 0 2173 2086 560 26 56 56 63 36 57 98 98 0 0.534 0.541 0.54 0.544 1.594 0.542 0.925 120 553 100 3247 3129 -0.906 1130 2117 1099 2030 139922 250297 26.659 56.194 0 0 0
AEG_V1.10006 362 366 137 37 64 64 73 42 57 96 95 0 525 520 182 35 56 56 61 35 57 98 95 0 0.635 0.651 0.634 0.638 1.663 0.638 0.727 120 610 100 767 766 -0.654 298 469 302 464 43929 62374 6.976 13.114 0 0 0
AEG_V1.10007 104 121 80 66 65 65 71 38 53 50 25 0 145 163 84 51 54 54 61 37 60 80 57 0 0.429 0.514 0.596 0.564 3.195 0.635 0.183 120 573 100 130 165 -1.222 39 91 56 109 14570 19593 1.316 2.757 0 0 0
AEG_V1.10008 132 141 70 49 65 65 72 39 54 68 41 0 173 184 73 39 54 54 60 33 55 93 80 0 0.563 0.585 0.757 0.599 3.129 0.583 0.171 120 563 100 186 206 -0.829 67 119 76 130 16878 22055 1.769 3.758 0 0 0
AEG_V1.10009 141 374 810 216 64 64 71 43 60 63 45 0 230 537 1239 230 55 55 64 49 76 79 65 0 0.44 0.643 0.578 0.556 2.393 0.661 0.871 120 679 100 252 792 -1.184 77 175 310 482 44862 64454 7.047 9.653 -50 0 0
AEG_V1.1001 934 903 305 33 69 69 79 43 54 99 97 0 1752 1658 425 25 57 57 67 47 70 100 99 0 0.51 0.521 0.501 0.488 1.465 0.525 0.9 120 600 100 2560 2435 -0.971 865 1695 834 1601 108374 198929 19.163 33.851 0 0 0
AEG_V1.10010 763 693 313 45 73 73 79 43 54 90 89 0 980 873 378 43 60 60 67 41 61 90 89 0 0.75 0.763 0.756 0.749 1.547 0.788 0.884 120 633 100 1610 1433 -0.415 690 920 620 813 83125 104725 14.279 19.659 -50 0 0
AEG_V1.10011 1266 1185 448 37 70 70 77 41 53 95 95 0 2307 2196 760 34 58 58 64 36 56 97 97 0 0.532 0.522 0.509 0.51 1.886 0.522 0.936 120 575 100 3445 3253 -0.911 1196 2249 1115 2138 142168 263555 27.024 59.222 0 0 0
AEG_V1.10012 1859 1803 509 28 69 69 78 42 53 99 98 0 4024 3785 1039 27 53 53 61 37 60 100 100 0 0.451 0.465 0.46 0.464 1.205 0.46 0.961 120 613 100 5761 5466 -1.15 1790 3971 1734 3732 216367 454202 41.071 100.649 0 0 0
AEG_V1.10013 588 577 232 40 68 68 75 41 54 96 94 0 719 728 257 35 59 59 64 36 56 95 95 0 0.788 0.761 0.789 0.761 1.715 0.762 0.809 120 642 100 1180 1178 -0.344 520 660 509 669 69248 87356 12.244 18.444 -50 0 0

Total number of rows: 21495

Table truncated, full table size 4320 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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