|
| Status |
Public on Sep 24, 2020 |
| Title |
P15_T_S12 |
| Sample type |
RNA |
| |
|
| Source name |
hepatocellular carcinoma (HCC)
|
| Organism |
Homo sapiens |
| Characteristics |
patient_id: P15
tissue: Liver
tissue type: Tumor
|
| Extracted molecule |
total RNA |
| Extraction protocol |
GeoMx Digital Spatial Profiling by NanoString technologies
|
| Label |
n/a
|
| Label protocol |
GeoMx Digital Spatial Profiling by NanoString technologies
|
| |
|
| Hybridization protocol |
GeoMx Digital Spatial Profiling by NanoString technologies
|
| Scan protocol |
GeoMx Digital Spatial Profiling by NanoString technologies
|
| Description |
ROI.csv file (Shows the relationship between RCC files and sample ID/ROI ID; Each RCC file can have multiple ROIs)
|
| Data processing |
Normalised to signal to noise ratio data is obtained from NanoString Technologies
Highly variable genes are handpicked from principal component analysis
Normalised to signal to noise ratio data stored in comma delimited file.
|
| |
|
| Submission date |
Aug 21, 2020 |
| Last update date |
Sep 24, 2020 |
| Contact name |
Ankur Sharma |
| E-mail(s) |
sharmaa@gis.a-star.edu.sg
|
| Phone |
+6586701153
|
| Organization name |
Genome Institute Of Singapore
|
| Lab |
Cancer Therapeutics and Stratified Oncology 5
|
| Street address |
60 Biopolis Street, Genome, #02-01
|
| City |
Singapore |
| State/province |
Singapore |
| ZIP/Postal code |
138672 |
| Country |
Singapore |
| |
|
| Platform ID |
GPL29053 |
| Series (2) |
| GSE156337 |
Onco-fetal reprogramming of endothelial cells drives immunosuppressive macrophages in Hepatocellular Carcinoma |
| GSE156626 |
Onco-fetal reprogramming of endothelial cells drives immunosuppressive macrophages in Hepatocellular Carcinoma (Nanostring) |
|
