|
| Status |
Public on Dec 03, 2009 |
| Title |
Hapmap_DS_2 (Agilent 251469334262) |
| Sample type |
genomic |
| |
|
| Channel 1 |
| Source name |
Hapmap
|
| Organism |
Homo sapiens |
| Characteristics |
sample: NA15510
|
| Biomaterial provider |
Coriell Cell Repositories http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA15510
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
standard Agilent protocol
|
| Label |
Cy5
|
| Label protocol |
standard Agilent protocol
|
| |
|
| Channel 2 |
| Source name |
Hapmap
|
| Organism |
Homo sapiens |
| Characteristics |
sample: NA10851
|
| Biomaterial provider |
Coriell Cell Repositories http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA10851
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
standard Agilent protocol
|
| Label |
Cy3
|
| Label protocol |
standard Agilent protocol
|
| |
|
| |
| Hybridization protocol |
standard Agilent protocol
|
| Scan protocol |
standard Agilent protocol
|
| Description |
Genomic DNA extracted from two HapMap individuals interrogated on the Agilent Human Genome CGH Microarray Kit 244A.
|
| Data processing |
Data were processed from raw text files using R and limma (using limma's “agilent” source option). Probes apparently not 60 bases in length were removed and arrays were normalized using the normexp deconvolution background correction method and loess regression of log-ratios to remove dye-bias.
|
| |
|
| Submission date |
Dec 02, 2009 |
| Last update date |
Dec 09, 2009 |
| Contact name |
Christina Curtis |
| E-mail(s) |
christina.curtis@cancer.org.uk
|
| Phone |
01223404231
|
| Fax |
1223 404208
|
| Organization name |
University of Cambridge
|
| Department |
Computational Biology/Oncology
|
| Lab |
Tavaré
|
| Street address |
Robinson Way
|
| City |
Cambridge |
| ZIP/Postal code |
CB20RE |
| Country |
United Kingdom |
| |
|
| Platform ID |
GPL4091 |
| Series (1) |
| GSE16400 |
The pitfalls of platform comparison: DNA copy number array technologies assessed |
|
