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Sample GSM479712 Query DataSets for GSM479712
Status Public on Jul 14, 2011
Title Donor: 158; Visit Number: 20; Visit Type: QUIET
Sample type RNA
 
Source name Donor: 158; Visit Number: 20; Visit Type: QUIET
Organism Homo sapiens
Characteristics history of acid reflux 0=no 1=yes: not reported
fasting status: NON-FASTING
bactin-gapdh 5' 3' ratio: 0.593
rn source key current: -1352225621
sample collection date: 2003-04-16 00:00:00
any relevant respiratory infections 0=no 1=yes: not reported
atopy status: not reported
days from visit to sample collection: 0
software analysis key current: -1352001363
bmi: not reported
lims hyb id: 200036969
maximum steroid exposure 4=systemic 3=inhaled 2=intranasal 1: 3
cel file path: /affy/ge1db0/store/cel/2003/september/200036969 1 jb.cel
ratio of monocytes to lymphocytes whole blood: 0.176165803108808
initial processing lab: AARI
ige level: not reported
any inhaled cs use 0=no 1=yes: not reported
any intranasal cs use 0=no 1=yes: not reported
rna extract srckey: 795258026
lims src id: 200026637
baseline severity nih guideline: Moderate Persistent
exacerbation visit subgroup based on k-means clustering: not reported
any systemic cs use 0=no 1=yes: not reported
sa key: 795482284
race: W
days since quiet visit: not reported
visit number: 20
country: AUS
fev1 predicted: not reported
leukotriene receptor antagonist use 0=no 1=yes: 0
cell type: PBMC
Extracted molecule total RNA
Extraction protocol RNA was extracted from human PBMCs
Label biotin
Label protocol Affymetrix in-vitro labeling protocol
 
Hybridization protocol Affymetrix standard hybridization protocol
Scan protocol Affymetrix standard scan protocol
Description Donor: 158;Visit Number:20;Visit Type:QUIET
Data processing Affymetrix MAS 5.0 algorithm
 
Submission date Dec 03, 2009
Last update date Jul 14, 2011
Contact name Andrew Hill
E-mail(s) andrew.hill@pfizer.com
Phone 617-674-6341
Organization name Pfizer
Department Research Business Technology
Street address 300 Technology Square
City Cambridge
State/province MA
ZIP/Postal code 02139
Country USA
 
Platform ID GPL96
Series (1)
GSE19301 Gene Expression Patterns in Peripheral Blood Mononuclear Cells Associated with Asthma Exacerbation Attack

Data table header descriptions
ID_REF Affymetrix Probeset
VALUE MAS 5.0 Signal value
DETECTION P-VALUE MAS 5.0 Detection p-value

Data table
ID_REF VALUE DETECTION P-VALUE
200641_s_at 558.693054 .000244
200675_at 323.050201 .000244
200695_at 234.071136 .008057
201618_x_at 166.528717 .000732
201646_at 57.602482 .005859
202617_s_at 31.951183 .111572
202641_at 37.929443 .000244
202651_at 188.026016 .000244
200703_at 211.63237 .00415
200727_s_at 54.31414 .018555
200739_s_at 129.761932 .00415
200755_s_at 4.601532 .633789
200759_x_at 127.90078 .00415
201732_s_at 5.721467 .72583
202707_at 3.67356 .567627
200773_x_at 2939.398926 .000244
200775_s_at 998.224854 .000244
200821_at 109.253288 .001221
202737_s_at 368.296173 .001953
200858_s_at 3408.729004 .000244

Total number of rows: 22283

Table truncated, full table size 622 Kbytes.




Supplementary file Size Download File type/resource
GSM479712_200036969_1_jb.cel.gz 3.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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