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Sample GSM48021

Query DataSets for GSM48021

Status

Public on Apr 12, 2005

Title

Lab 6 Sample 2 versus Sample 1 Replicate 1

Sample type

RNA

Channel 1

Source name

Sample2_Cy5

Organism

Homo sapiens

Extracted molecule

total RNA

Channel 2

Source name

Sample1_Cy3

Organism

Homo sapiens

Extracted molecule

total RNA

Description

Dyeswap of Lab 6 Sample 2 versus Sample 1 Replicate 2. Samples 1 and 2 represent unique mixtures of total RNA from four knockout cell lines: PEX1, PEX6, PEX7, and PEX12. Each of the four cell lines is deficient for one of four PEX genes (required for peroxisome biogenesis/mutations cause peroxisome biogenesis disorders).

Submission date

Apr 09, 2005

Last update date

May 27, 2005

Contact name

Rafael Irizarry

E-mail(s)

rafa@jhu.edu

Phone

410-502-6920

Organization name

Johns Hopkins University

Street address

City

Baltimore

State/province

ZIP/Postal code

21205

Country

USA

Platform ID

GPL1953

Series (2)

GSE2512	Multiple Lab Comparison of Microarray Platforms
GSE2521	Platform Comparison Study

Data table header descriptions
ID_REF
VALUE	log2 normalized intensity ratio, i.e., log2(VALUE).

Data table
ID_REF	VALUE
1	-0.226207196
2	0.009067726
3	-0.172012682
4	0.634639747
5	-0.332065898
6	-0.38574506
7	0.002390648
8	-0.110549491
9	-0.124776389
10	-0.280217236
11	0.025906327
12	0.764458786
13	-0.146524374
14	0.068573973
15	0.102441939
16	0.760359136
17	0.083156216
18	-0.260602317
19	0.400217462
20	0.292307124

Total number of rows: 20000

Table truncated, full table size 348 Kbytes.

Supplementary data files not provided