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Sample GSM48196 Query DataSets for GSM48196
Status Public on Apr 21, 2005
Title C-3-3
Sample type RNA
 
Channel 1
Source name cy3 Pool
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name cy5 Liver5
Organism Mus musculus
Extracted molecule total RNA
 
 
Description Each laboratory was provided with aliquots of two different RNA samples that were prepared in one of the Consortium laboratories - a sample prepared from mouse livers (Liver RNA), and a sample prepared from equal amounts of RNA isolated from five mouse tissues (liver, kidney, lung, brain and spleen: Pooled RNA).
 
Submission date Apr 13, 2005
Last update date May 27, 2005
Contact name Kenneth Lyon Phillips
E-mail(s) kphillips@icoria.com
Phone 919 425 3075
Organization name Paradigm Array Labs
Street address
City Research Triangle Park
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL1955
Series (1)
GSE2458 Cross-platform comparability of microarray data

Data table header descriptions
ID_REF
X the X-coordinate in µm of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
Y the Y-coordinate in µm of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
Dia. the diameter in µm of the feature-indicator.
F685 Median
F685 Mean
F685 SD
B685 Median
B685 Mean
B685 SD
% > B685+1SD
% > B685+2SD
F685 % Sat.
F595 Median
F595 Mean
F595 SD
B595 Median
B595 Mean
B595 SD
% > B595+1SD
% > B595+2SD
F595 % Sat.
Ratio of Medians (685/595)
Ratio of Means (685/595)
Median of Ratios (685/595)
Mean of Ratios (685/595)
Ratios SD (685/595)
Rgn Ratio (685/595)
Rgn R² (685/595)
F Pixels the total number of feature pixels.
B Pixels the total number of background pixels.
Sum of Medians the sum of the median intensities for each wavelength, with the median background subtracted.
Sum of Means the sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
VALUE log (base 2) transform of the ratio of the medians.
F685 Median - B685
F595 Median - B595
F685 Mean - B685
F595 Mean - B595
F685 Total Intensity
F595 Total Intensity
SNR 685
SNR 595
Flags the type of flag associated with a feature.
Normalize the normalization status of the feature (included/not included).

Data table
ID_REF X Y Dia. F685 Median F685 Mean F685 SD B685 Median B685 Mean B685 SD % > B685+1SD % > B685+2SD F685 % Sat. F595 Median F595 Mean F595 SD B595 Median B595 Mean B595 SD % > B595+1SD % > B595+2SD F595 % Sat. Ratio of Medians (685/595) Ratio of Means (685/595) Median of Ratios (685/595) Mean of Ratios (685/595) Ratios SD (685/595) Rgn Ratio (685/595) Rgn R² (685/595) F Pixels B Pixels Sum of Medians Sum of Means VALUE F685 Median - B685 F595 Median - B595 F685 Mean - B685 F595 Mean - B595 F685 Total Intensity F595 Total Intensity SNR 685 SNR 595 Flags Normalize
1 840 1040 70 140 141 5 126 127 3 100 96 0 152 150 11 108 113 22 100 46 0 0.318 0.357 0.384 0.343 1.343 0.153 0.314 32 202 58 57 -1.652 14 44 15 42 4504 4795 4.667 1.682 0 0
2 980 1040 80 155 155 11 126 126 3 100 100 0 356 333 60 104 106 11 100 100 0 0.115 0.127 0.120 0.119 1.214 0.131 0.943 52 210 281 258 -3.119 29 252 29 229 8046 17332 9.667 20.636 0 0
3 1120 1040 100 155 154 17 125 125 2 98 93 0 187 184 40 104 105 5 100 100 0 0.361 0.363 0.355 0.334 1.334 0.372 0.949 80 220 113 109 -1.468 30 83 29 80 12333 14738 14.500 15.800 0 0
4 1260 1040 100 238 234 64 126 125 2 100 100 0 416 409 166 106 106 4 100 100 0 0.361 0.356 0.358 0.336 1.203 0.367 0.987 80 219 422 411 -1.469 112 310 108 303 18736 32716 54.500 75.750 0 0
5 1400 1030 90 150 150 10 125 125 2 100 100 0 176 173 20 107 107 2 100 100 0 0.362 0.379 0.373 0.369 1.203 0.388 0.936 52 204 94 91 -1.465 25 69 25 66 7823 9006 12.500 33.000 0 0
6 1540 1040 90 164 166 15 125 125 2 100 100 0 263 251 34 106 106 5 100 100 0 0.248 0.283 0.268 0.272 1.231 0.292 0.941 52 220 196 186 -2.009 39 157 41 145 8651 13068 20.500 29.000 0 0
7 1680 1030 90 195 190 28 125 125 2 100 100 0 326 316 53 104 105 7 100 100 0 0.315 0.307 0.341 0.283 1.415 0.321 0.911 52 215 292 277 -1.665 70 222 65 212 9899 16431 32.500 30.143 0 0
8 1810 1030 90 148 147 10 125 125 2 100 100 0 163 163 18 106 106 3 100 100 0 0.404 0.386 0.398 0.371 1.386 0.385 0.865 52 220 80 79 -1.309 23 57 22 57 7662 8470 11.000 19.000 0 0
9 1950 1030 90 151 150 11 125 125 2 100 92 0 192 188 26 108 108 3 100 100 0 0.310 0.313 0.324 0.285 1.495 0.320 0.904 52 231 110 105 -1.692 26 84 25 80 7811 9783 12.500 26.667 0 0
10 2090 1030 90 141 140 5 124 124 2 98 94 0 168 162 15 106 106 3 100 100 0 0.274 0.286 0.286 0.271 1.348 0.285 0.880 52 251 79 72 -1.867 17 62 16 56 7269 8408 8.000 18.667 0 0
11 2230 1030 90 210 200 22 124 124 2 100 100 0 306 280 52 103 103 3 100 100 0 0.424 0.429 0.429 0.427 1.074 0.432 0.989 52 235 289 253 -1.239 86 203 76 177 10375 14546 38.000 59.000 0 0
12 2380 1030 90 223 219 18 124 124 2 100 100 0 338 322 44 102 102 3 100 100 0 0.419 0.432 0.437 0.435 1.056 0.435 0.992 52 243 335 315 -1.253 99 236 95 220 11406 16725 47.500 73.333 0 0
13 2520 1030 80 137 137 4 124 124 2 100 100 0 169 164 13 104 104 4 100 100 0 0.200 0.217 0.209 0.203 1.289 0.213 0.842 52 199 78 73 -2.322 13 65 13 60 7102 8536 6.500 15.000 0 0
14 2660 1020 90 160 158 17 124 124 2 100 98 0 201 193 31 109 109 5 100 100 0 0.391 0.405 0.396 0.367 1.361 0.418 0.947 52 217 128 118 -1.354 36 92 34 84 8222 10031 17.000 16.800 0 0
15 2800 1030 80 171 166 20 124 124 2 100 100 0 220 217 32 110 110 4 100 100 0 0.427 0.393 0.365 0.362 1.387 0.410 0.896 52 186 157 149 -1.227 47 110 42 107 8653 11305 21.000 26.750 0 0
16 2940 1020 80 137 137 5 124 124 2 98 94 0 152 150 12 106 107 4 100 100 0 0.283 0.295 0.286 0.281 1.358 0.312 0.865 52 202 59 57 -1.823 13 46 13 44 7125 7820 6.500 10.750 0 0
17 3080 1020 90 202 195 24 122 122 2 100 100 0 283 277 56 101 102 4 100 100 0 0.440 0.415 0.414 0.413 1.096 0.413 0.988 52 254 262 249 -1.186 80 182 73 176 10154 14414 36.500 43.750 0 0
18 3220 1020 80 127 127 2 122 122 2 88 61 0 126 125 6 99 99 2 100 100 0 0.185 0.192 0.197 0.177 1.654 0.200 0.549 52 210 32 31 -2.433 5 27 5 26 6610 6524 2.500 13.000 0 0
19 3360 1020 80 125 125 2 122 122 2 61 30 0 120 119 4 100 100 3 100 100 0 0.150 0.158 0.200 0.174 1.827 0.155 0.288 52 187 23 22 -2.737 3 20 3 19 6510 6187 1.500 6.333 0 0
20 3500 1020 100 146 144 12 123 123 2 97 90 0 148 147 23 102 102 2 100 100 0 0.500 0.467 0.475 0.438 1.397 0.495 0.953 80 188 69 66 -1.000 23 46 21 45 11555 11776 10.500 22.500 0 0

Total number of rows: 17664

Table truncated, full table size 3054 Kbytes.




Supplementary data files not provided
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