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Sample GSM4821001 Query DataSets for GSM4821001
Status Public on Oct 08, 2020
Title MU01-0921-Ctrl
Sample type RNA
 
Source name Urine
Organism Homo sapiens
Characteristics tissue: Urine
histopathology: Control
Extracted molecule total RNA
Extraction protocol Standard urine exosome RNA isolation method by Norgen Biotek Corp.
Label biotin
Label protocol Standard Affymetrix microRNA labeling protocol
 
Hybridization protocol Following labeling, 21.5uL of biotin-labeled samples were hybridized for 16 hr at 48C on GeneChip miRNA4.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using Affymetrix Scanner 3000 7G with AGCC software.
Data processing CEL files were analyzed for quality using Affymetrix Transcriptome Analysis Console 4.0 software, and the RMA-DBAG was used for summarization
 
Submission date Oct 07, 2020
Last update date Oct 08, 2020
Contact name Martin Tenniswood
E-mail(s) martin.tenniswood@mirscientific.com
Organization name miR Scientific LLC
Street address 1 Discovery Drive
City Rensselaer
ZIP/Postal code 12144
Country USA
 
Platform ID GPL21572
Series (1)
GSE159177 Urinary exosomal small non-coding RNA expression of prostate cancer patients

Data table header descriptions
ID_REF
VALUE Quantification
DETECTION P-VALUE

Data table
ID_REF VALUE DETECTION P-VALUE
20500112 1.55515 0.229288
20500113 0.25874 0.99821
20500114 1.18719 0.379874
20500115 0.85684 0.521369
20500116 2.33383 0.00302968
20500117 0.45912 0.529238
20500118 0.47481 0.750136
20500119 1.53686 0.15115
20500120 1.23982 0.188115
20500121 1.25998 0.592124
20500122 0.4046 0.990128
20500123 -0.03414 0.481011
20500124 1.23916 0.517951
20500125 0.38617 0.958965
20500126 0.5053 0.69974
20500127 0.44361 0.453216
20500128 0.87263 0.317453
20500129 1.9988 0.00483355
20500130 0.86803 0.74113
20500131 0.04285 0.724748

Total number of rows: 6658

Table truncated, full table size 169 Kbytes.




Supplementary file Size Download File type/resource
GSM4821001_MU01-0921.CEL.gz 626.2 Kb (ftp)(http) CEL
GSM4821001_MU01-0921.rma-dabg-no-norm.chp.gz 65.3 Kb (ftp)(http) CHP
Processed data included within Sample table

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