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| Status |
Public on Oct 23, 2020 |
| Title |
Liver_KCZ_High_Day7_rep1 |
| Sample type |
SRA |
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| Source name |
Liver
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| Organism |
Rattus norvegicus |
| Characteristics |
tissue: Liver
strain: Sprague-Dawley
treatment: 100 mg/kg ketoconazole for 7 days
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| Extracted molecule |
total RNA |
| Extraction protocol |
Total RNA was extracted from rat liver tissues using RNeasy Plus Universal Mini kits according to the manufacturer's protocol
Small RNA libraries were constructed using Illumina TruSeq Small RNA Library Preparation kits according to the manufacturer's protocol
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| Library strategy |
miRNA-Seq |
| Library source |
transcriptomic |
| Library selection |
size fractionation |
| Instrument model |
Illumina HiSeq 2000 |
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| Data processing |
Alignment, annotation and quantification by miRDeep2
Genome_build: rn6
Supplementary_files_format_and_content: Matrix table with raw miRNA counts for every miRNA and every sample
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| Submission date |
Oct 07, 2020 |
| Last update date |
Oct 23, 2020 |
| Contact name |
Dongying Li |
| E-mail(s) |
dongying.li@fda.hhs.gov
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| Organization name |
FDA
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| Department |
NCTR
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| Street address |
3900 NCTR Rd
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| City |
Jefferson |
| State/province |
AR |
| ZIP/Postal code |
72079 |
| Country |
USA |
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| Platform ID |
GPL14844 |
| Series (1) |
| GSE159200 |
Identification of translational microRNA biomarker candidates for ketoconazole-induced liver injury using next-generation sequencing |
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| Relations |
| BioSample |
SAMN16392212 |
| SRA |
SRX9258848 |
| Supplementary data files not provided |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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