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GEO accession:
Sample GSM4837594
Query DataSets for GSM4837594
Status
Public on Oct 21, 2020
Title
MDA1
Sample type
genomic
Source name
MDA-MB-231, replicate 1
Organism
Homo sapiens
Characteristics
cell line: MDA-MB-231
cell type: cell line
sample group: G3
Growth protocol
Cell were grown in the corresponding media in standard conditions
Extracted molecule
genomic DNA
Extraction protocol
Quiagen DNAeasy
Label
C-Bio and A-DNP
Label protocol
As per manufacturer (Illumina)
Hybridization protocol
As per manufacturer (Illumina)
Scan protocol
As per manufacturer (Illumina)
Data processing
Genome Studio 2.0 ( Illumina), cnvPartition 3.2.0 plugin
Submission date
Oct 20, 2020
Last update date
Oct 21, 2020
Contact name
Daria Miroshnychenko
E-mail(s)
daria.miroshnychenko@moffitt.org
Organization name
Moffitt Cancer Center
Department
Cancer Physiology
Lab
Marusyk Lab
Street address
12902 USF Magnolia Drive
City
TAMPA
State/province
FL
ZIP/Postal code
33612
Country
USA
Platform ID
GPL29257
Series (2)
GSE159680
Spontaneous Cell Fusions as a Mechanism of Parasexual Recombination in Tumor Cell Populations. [2]
GSE159681
Spontaneous Cell Fusions as a Mechanism of Parasexual Recombination in Tumor Cell Populations
Data table header descriptions
ID_REF
VALUE
Genotype Call (SNP call): AA, AB, BB, NC
MDA1.Theta
MDA1.R
MDA1.B Allele Freq
MDA1.Log R Ratio
MDA1.GType
MDA1.CNV Value
Data table
ID_REF
VALUE
MDA1.Theta
MDA1.R
MDA1.B Allele Freq
MDA1.Log R Ratio
MDA1.GType
MDA1.CNV Value
rs9786882
0.06254685
0.5355752
0.1225435
0.7645614
0.2009197
NC
2
rs9786873
0.09666222
0.5792761
0.04571629
0.5808762
-0.06352866
NC
2
rs9786778
0.02850576
0.2070243
0.02547666
0.01961262
-0.6006157
NC
2
rs9786467
0.07905273
0.7390106
0.09313939
0.7402189
0.04458223
NC
2
rs9786452
0.08812791
0.59324
0.04781515
0.6035422
-0.1629719
NC
2
rs9786352
0.05157151
0.5097615
0.03523732
0.5130114
-0.2954097
NC
0
rs9786130
0.2778449
0.6765108
0.08943607
0.679072
0.03814671
AB
2
rs9785755
0.03496441
0.4106644
0.02608993
0.3996848
-0.6902931
NC
2
rs9699410
0.2216143
0.6991292
0.08794914
0.7053861
-0.07543076
AB
2
rs7893052
0.06081193
0.4390624
0.03840635
0.4353433
-0.2557871
NC
2
rs4304517
0.2274522
0.4894784
0.06616525
0.536364
-1.806
AB
2
rs35828002
NULL
NULL
NULL
NULL
NULL
NC
2
rs34703625
0.1123664
0.8652054
0.05891585
1
-0.2324968
NC
2
rs28840979
0.1367944
0.5941033
0.05426318
0.6020539
-0.3425807
NC
2
rs28811909
0.4117413
0.4783657
0.09029906
0.4791505
0.1498347
AB
2
rs2724844
0.03666333
0.2589224
0.04267748
0.2504328
-0.5118475
NC
2
rs2032597
0.09522285
0.6262665
0.04612917
0.6308351
-0.2748253
NC
2
rs2032596
0.08518649
0.6925185
0.04948602
0.694257
-0.3799773
NC
2
rs2032595
0.2860023
0.6451758
0.3314664
0.6433071
0.1431738
AB
2
rs2032594
0.08058098
0.4441967
0.04445406
0.4448059
-0.02934701
NC
2
Total number of rows:
294602
Table truncated, full table size
17954 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
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