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GEO accession:
Sample GSM4837600
Query DataSets for GSM4837600
Status
Public on Oct 21, 2020
Title
MS2
Sample type
genomic
Source name
hybrid between MDA-MB-231 and SUM159PT, subclone 2
Organism
Homo sapiens
Characteristics
cell line: hybrid between MDA-MB-231 and SUM159PT
cell type: cell line
sample group: G9
Growth protocol
Cell were grown in the corresponding media in standard conditions
Extracted molecule
genomic DNA
Extraction protocol
Quiagen DNAeasy
Label
C-Bio and A-DNP
Label protocol
As per manufacturer (Illumina)
Hybridization protocol
As per manufacturer (Illumina)
Scan protocol
As per manufacturer (Illumina)
Data processing
Genome Studio 2.0 ( Illumina), cnvPartition 3.2.0 plugin
Submission date
Oct 20, 2020
Last update date
Oct 21, 2020
Contact name
Daria Miroshnychenko
E-mail(s)
daria.miroshnychenko@moffitt.org
Organization name
Moffitt Cancer Center
Department
Cancer Physiology
Lab
Marusyk Lab
Street address
12902 USF Magnolia Drive
City
TAMPA
State/province
FL
ZIP/Postal code
33612
Country
USA
Platform ID
GPL29257
Series (2)
GSE159680
Spontaneous Cell Fusions as a Mechanism of Parasexual Recombination in Tumor Cell Populations. [2]
GSE159681
Spontaneous Cell Fusions as a Mechanism of Parasexual Recombination in Tumor Cell Populations
Data table header descriptions
ID_REF
VALUE
Genotype Call (SNP call): AA, AB, BB, NC
MS2.Theta
MS2.R
MS2.B Allele Freq
MS2.Log R Ratio
MS2.GType
MS2.CNV Value
Data table
ID_REF
VALUE
MS2.Theta
MS2.R
MS2.B Allele Freq
MS2.Log R Ratio
MS2.GType
MS2.CNV Value
rs9786882
0.121296
0.6838343
0.128999
1
0.005375095
NC
2
rs9786873
0.1087895
0.5756406
0.04786293
0.5770494
0.007132176
NC
2
rs9786778
0.03276758
0.2084171
0.02903868
0.0224431
-0.4129146
NC
2
rs9786467
0.03297146
0.761231
0.05182678
0.7636088
-0.8184235
NC
2
rs9786452
0.0796705
0.4074225
0.04571755
0.4079448
-0.1034568
NC
2
rs9786352
0.1480747
0.2856537
0.07239044
0.2771084
0.7734199
NC
2
rs9786130
0.04503573
0.7526944
0.05713353
0.7592653
-0.6689306
NC
2
rs9785755
0.03570709
0.5440934
0.02655942
0.5401364
-0.7211774
NC
2
rs9699410
0.2096652
0.5783192
0.06265919
0.5782177
-0.4681878
AB
2
rs7893052
0.04055888
0.5682446
0.0294183
0.5713246
-0.7298123
NC
2
rs4304517
0.3985122
0.9303493
0.2447643
1
0.02908009
BB
2
rs35828002
NULL
NULL
NULL
NULL
NULL
NC
2
rs34703625
0.1073412
0.8955772
0.0575901
1
-0.2920458
NC
2
rs28840979
0.07634085
0.3099684
0.04800368
0.3029645
-0.3974651
NC
2
rs28811909
0.3024293
0.6097952
0.07312655
0.6174973
-0.2521439
AB
2
rs2724844
0.1796133
0.3807373
0.06158212
0.3786591
0.001860169
AB
2
rs2032597
0.04959723
0.6938359
0.03758308
0.7019607
-0.6430146
NC
2
rs2032596
0.189228
0.6245493
0.06186461
0.6227105
0.01127572
AB
2
rs2032595
0.1626378
0.6764283
0.259191
0.6762045
-0.2140613
AB
2
rs2032594
0.09402941
0.5439042
0.04752839
0.5497611
0.003218845
NC
2
Total number of rows:
294602
Table truncated, full table size
18149 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record
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