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Sample GSM485221 Query DataSets for GSM485221
Status Public on Oct 02, 2010
Title BM-MSC_rep 2
Sample type RNA
 
Source name BM-MSC from patient
Organism Homo sapiens
Characteristics cell type: BM-MSC
Extracted molecule total RNA
Extraction protocol All human MSCs used for experiment were cultured in the MesenCultTM medium in the presence of 5% CO2, or in Dulbecco's modified Eagle's medium DMEM supplemented with 10% fetal bovine serum . For BM-MSCs isolation, the mononuclear fraction of bone marrow was isolated by Histopaque-1077 gradient (1077-1; Sigma, USA), and plated in culture medium. Non-adherent cells were abandoned on next day
Total RNA were extracted by RNeasy mini kit (Cat. 74106; Qiagen, Hilden, Germany), and 100 ng to 1 ug of total RNA were subjected into reverse transcription using the SuperScriptTM III Reverse transcriptase kit (Invitrogen) as directed by the manufacturer.
Label Biotin
Label protocol standard Affymetrix procedures
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description BM-MSC from patient
Data processing RMA through R based affy module
 
Submission date Dec 14, 2009
Last update date Oct 02, 2010
Contact name Wei-Lun Hwang
Organization name National Yang Ming Chiao Tung University
Department Department of Biotechnology and Laboratory Science in Medicine
Lab WLH LAB
Street address No.155, Sec.2, Linong Street
City Taipei
ZIP/Postal code 11221
Country Taiwan
 
Platform ID GPL570
Series (1)
GSE19471 Gene epression profile in human BM-MSC

Data table header descriptions
ID_REF
VALUE expression value

Data table
ID_REF VALUE
1007_s_at 8.376598856
1053_at 8.045056532
117_at 6.827823305
121_at 9.253420847
1255_g_at 4.315292414
1294_at 8.038125126
1316_at 6.182304519
1320_at 6.764462868
1405_i_at 4.004989578
1431_at 4.545927958
1438_at 7.313047402
1487_at 7.787805368
1494_f_at 6.829396376
1552256_a_at 7.769278255
1552257_a_at 9.115328225
1552258_at 6.332964778
1552261_at 6.067287315
1552263_at 6.821154737
1552264_a_at 8.583290514
1552266_at 5.224307581

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM485221.cel.gz 5.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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