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Sample GSM485222 Query DataSets for GSM485222
Status Public on Oct 02, 2010
Title BM-MSC_rep 3
Sample type RNA
 
Source name BM-MSC from patient
Organism Homo sapiens
Characteristics cell type: BM-MSC
Extracted molecule total RNA
Extraction protocol All human MSCs used for experiment were cultured in the MesenCultTM medium in the presence of 5% CO2, or in Dulbecco's modified Eagle's medium DMEM supplemented with 10% fetal bovine serum . For BM-MSCs isolation, the mononuclear fraction of bone marrow was isolated by Histopaque-1077 gradient (1077-1; Sigma, USA), and plated in culture medium. Non-adherent cells were abandoned on next day
Total RNA were extracted by RNeasy mini kit (Cat. 74106; Qiagen, Hilden, Germany), and 100 ng to 1 ug of total RNA were subjected into reverse transcription using the SuperScriptTM III Reverse transcriptase kit (Invitrogen) as directed by the manufacturer.
Label Biotin
Label protocol standard Affymetrix procedures
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description BM-MSC from patient
Data processing RMA through R based affy module
 
Submission date Dec 14, 2009
Last update date Oct 02, 2010
Contact name Wei-Lun Hwang
Organization name National Yang Ming Chiao Tung University
Department Department of Biotechnology and Laboratory Science in Medicine
Lab WLH LAB
Street address No.155, Sec.2, Linong Street
City Taipei
ZIP/Postal code 11221
Country Taiwan
 
Platform ID GPL570
Series (1)
GSE19471 Gene epression profile in human BM-MSC

Data table header descriptions
ID_REF
VALUE expression value

Data table
ID_REF VALUE
1007_s_at 8.171288352
1053_at 7.947753668
117_at 6.871575991
121_at 9.373916716
1255_g_at 4.327795524
1294_at 7.738336741
1316_at 6.270636746
1320_at 6.513706555
1405_i_at 3.807903821
1431_at 4.510690706
1438_at 7.036091184
1487_at 7.794748221
1494_f_at 6.463348916
1552256_a_at 7.472848552
1552257_a_at 9.051657883
1552258_at 6.378371651
1552261_at 6.205448786
1552263_at 6.282106286
1552264_a_at 8.644770356
1552266_at 5.341852976

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM485222.cel.gz 5.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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