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Sample GSM487943 Query DataSets for GSM487943
Status Public on Apr 21, 2011
Title Sample 12 - MLL/AF9
Sample type RNA
 
Source name Bone Marrow cells
Organism Homo sapiens
Characteristics disease state: AML samples
cells: Bone Marrow
Extracted molecule total RNA
Extraction protocol Total RNA extracted using Trizol
Label biotin
Label protocol Biotinylated aRNA were prepared according to the standard Affymetrix IVT express protocol from 100 ng total RNA (Expression Analysis Technical Manual, 2008, Affymetrix).
 
Hybridization protocol Following fragmentation, 12.5 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the Scan GCS3000 7G
Description Gene expression data from acute myeloid leukemia with MLL/AF9 translocations at diagnosis
Data processing The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
 
Submission date Dec 18, 2009
Last update date Mar 25, 2020
Contact name Andrea Zangrando
E-mail(s) andrea.zangrando@unipd.it
Organization name University of Padova
Department Woman and Child's Health
Lab Hemato-Oncology
Street address Via Giustiniani, 3
City Padova
ZIP/Postal code 35138
Country Italy
 
Platform ID GPL570
Series (1)
GSE19577 MLL partner genes confer distinct biological and clinical signatures of pediatric AML, an AIEOP study
Relations
Reanalyzed by GSE147515

Data table header descriptions
ID_REF
VALUE RMA signal intensity

Data table
ID_REF VALUE
1007_s_at 4.777795334
1053_at 7.769185758
117_at 6.533333081
121_at 7.167113175
1255_g_at 2.649733201
1294_at 8.222017733
1316_at 6.307876182
1320_at 3.491424446
1405_i_at 10.37665247
1431_at 3.850666029
1438_at 4.462885261
1487_at 6.732328618
1494_f_at 4.912545645
1552256_a_at 6.534137963
1552257_a_at 7.710456369
1552258_at 7.029923285
1552261_at 3.304927027
1552263_at 7.955788935
1552264_a_at 8.207073
1552266_at 4.230203444

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM487943.CEL.gz 4.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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