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Sample GSM487944 Query DataSets for GSM487944
Status Public on Apr 21, 2011
Title Sample 13 - MLL/AF9
Sample type RNA
 
Source name Bone Marrow cells
Organism Homo sapiens
Characteristics disease state: AML samples
cells: Bone Marrow
Extracted molecule total RNA
Extraction protocol Total RNA extracted using Trizol
Label biotin
Label protocol Biotinylated aRNA were prepared according to the standard Affymetrix IVT express protocol from 100 ng total RNA (Expression Analysis Technical Manual, 2008, Affymetrix).
 
Hybridization protocol Following fragmentation, 12.5 ug of aRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the Scan GCS3000 7G
Description Gene expression data from acute myeloid leukemia with MLL/AF9 translocations at diagnosis
Data processing The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org]
 
Submission date Dec 18, 2009
Last update date Mar 25, 2020
Contact name Andrea Zangrando
E-mail(s) andrea.zangrando@unipd.it
Organization name University of Padova
Department Woman and Child's Health
Lab Hemato-Oncology
Street address Via Giustiniani, 3
City Padova
ZIP/Postal code 35138
Country Italy
 
Platform ID GPL570
Series (1)
GSE19577 MLL partner genes confer distinct biological and clinical signatures of pediatric AML, an AIEOP study
Relations
Reanalyzed by GSE147515

Data table header descriptions
ID_REF
VALUE RMA signal intensity

Data table
ID_REF VALUE
1007_s_at 4.809233965
1053_at 8.424653516
117_at 5.55752597
121_at 7.503395264
1255_g_at 2.840133801
1294_at 8.737621709
1316_at 5.502076623
1320_at 3.575001635
1405_i_at 12.69662395
1431_at 4.568573995
1438_at 5.480893955
1487_at 7.864133887
1494_f_at 5.194726616
1552256_a_at 7.042097591
1552257_a_at 8.303147467
1552258_at 4.96055399
1552261_at 3.582201781
1552263_at 8.935808499
1552264_a_at 8.998571211
1552266_at 2.425918473

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM487944.CEL.gz 4.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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