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Sample GSM4887030 Query DataSets for GSM4887030
Status Public on Nov 03, 2022
Title ISFC2
Sample type SRA
 
Source name spleen
Organism Mus musculus
Characteristics tissue: spleen
agent: Busulfan+Con-FMT
Treatment protocol Oral dosing
Extracted molecule total RNA
Extraction protocol Total RNA from spleen
RNA libraries were prepared for sequencing using standard BGISEQ protocols
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model BGISEQ-500
 
Data processing The instrument model is BGISEQ-500
The original sequencing data contained reads with low quality, joint contamination and high unknown base N content. These reads needed to be removed before data analysis to ensure the reliability of the results
After clean reads were obtained, clean reads were aligned to the reference genome sequence using HISAT
Clean reads were aligned to the reference gene sequence using Bowtie2 to obtain alignment results.
Genome_build: mm10
Supplementary_files_format_and_content: Matrix table with raw gene counts for every gene and every sample
 
Submission date Nov 06, 2020
Last update date Nov 03, 2022
Contact name Yong Zhao
E-mail(s) yzhao818@hotmail.com
Phone 86-18661613617
Organization name Qingdao Agricultural University
Department College of Life Sciences
Lab B604
Street address 700 Changcheng Road
City Qingdao
State/province Shandong
ZIP/Postal code 266109
Country China
 
Platform ID GPL23479
Series (1)
GSE160965 FMT improve spleen function
Relations
BioSample SAMN16686443
SRA SRX9450309

Supplementary file Size Download File type/resource
GSM4887030_ISFC2.txt.gz 794.4 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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