NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM490133 Query DataSets for GSM490133
Status Public on Dec 23, 2010
Title blood tissue from GDM woman
Sample type RNA
 
Source name GDM blood tissue
Organism Homo sapiens
Characteristics tissue: blood
Extracted molecule total RNA
Extraction protocol Total RNA of whole blood was obtained using QIAamp RNA Blood Mini Kit (Qiagen) and digested with RNase-Free DNase (Promega) according to the manufacturer’s suggestions. Total RNA of the placenta tissue was obtained using the TRIzol reagent (Invitrogen) according to the manufacturer’s suggestions.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays by using 500ng total RNA
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description n/a
Data processing The data were normalised using cubic spline method with Beadstudio software
 
Submission date Dec 24, 2009
Last update date Dec 23, 2010
Contact name Dapeng Wang
Organization name Beijing Institute of Genomics
Street address No.7 Beitucheng West Road, Chaoyang District, Beijing 100029, PR China
City Beijing
ZIP/Postal code 100029
Country China
 
Platform ID GPL7350
Series (1)
GSE19649 Genomic expression profiles of blood and placenta in Chinese women with gestational diabetes

Data table header descriptions
ID_REF
VALUE Cubic spline normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_10000 120.0003 0.001455604
ILMN_100000 1.995559 0.3333333
ILMN_100007 -9.918722 0.9672489
ILMN_100009 2.09501 0.3275109
ILMN_10001 684.3307 0
ILMN_100010 18.55454 0.02183406
ILMN_10002 -0.7263551 0.5007278
ILMN_100028 74.06997 0.002911208
ILMN_100030 -5.182549 0.8034934
ILMN_100031 2.127467 0.3253275
ILMN_100034 -5.266095 0.8078603
ILMN_100037 -0.4935822 0.4781659
ILMN_10004 8.412884 0.1113537
ILMN_10005 11.61934 0.06477438
ILMN_100054 -5.317425 0.8129549
ILMN_100059 3.640339 0.2576419
ILMN_10006 9.584764 0.09315866
ILMN_100075 -8.444437 0.9388646
ILMN_100079 -1.576504 0.5611354
ILMN_100083 7.193489 0.1317322

Total number of rows: 46713

Table truncated, full table size 1363 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap