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Sample GSM490134 Query DataSets for GSM490134
Status Public on Dec 23, 2010
Title pooled blood tissues from four GDM women
Sample type RNA
 
Source name GDM blood tissue
Organism Homo sapiens
Characteristics tissue: blood
Extracted molecule total RNA
Extraction protocol Total RNA of whole blood was obtained using QIAamp RNA Blood Mini Kit (Qiagen) and digested with RNase-Free DNase (Promega) according to the manufacturer’s suggestions. Total RNA of the placenta tissue was obtained using the TRIzol reagent (Invitrogen) according to the manufacturer’s suggestions.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays by using 500ng total RNA
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description n/a
Data processing The data were normalised using cubic spline method with Beadstudio software
 
Submission date Dec 24, 2009
Last update date Dec 23, 2010
Contact name Dapeng Wang
Organization name Beijing Institute of Genomics
Street address No.7 Beitucheng West Road, Chaoyang District, Beijing 100029, PR China
City Beijing
ZIP/Postal code 100029
Country China
 
Platform ID GPL7350
Series (1)
GSE19649 Genomic expression profiles of blood and placenta in Chinese women with gestational diabetes

Data table header descriptions
ID_REF
VALUE Cubic spline normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_10000 63.77444 0.002911208
ILMN_100000 3.489957 0.2496361
ILMN_100007 -7.812764 0.9315866
ILMN_100009 -0.8846366 0.518195
ILMN_10001 868.3124 0
ILMN_100010 6.746315 0.1244541
ILMN_10002 -16.10479 1
ILMN_100028 59.35611 0.002911208
ILMN_100030 -3.514794 0.713246
ILMN_100031 5.620168 0.1615721
ILMN_100034 -7.746901 0.930131
ILMN_100037 0.8738121 0.3922853
ILMN_10004 11.81837 0.05021834
ILMN_10005 20.3206 0.01746725
ILMN_100054 -4.853884 0.790393
ILMN_100059 4.133915 0.220524
ILMN_10006 8.348763 0.09606987
ILMN_100075 5.713504 0.157933
ILMN_100079 -4.579944 0.772198
ILMN_100083 3.434916 0.2503639

Total number of rows: 46713

Table truncated, full table size 1357 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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