NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM490137 Query DataSets for GSM490137
Status Public on Dec 23, 2010
Title pooled placenta tissues from two healthy women
Sample type RNA
 
Source name non-GDM placenta tissues
Organism Homo sapiens
Characteristics tissue: placenta
Extracted molecule total RNA
Extraction protocol Total RNA of whole blood was obtained using QIAamp RNA Blood Mini Kit (Qiagen) and digested with RNase-Free DNase (Promega) according to the manufacturer’s suggestions. Total RNA of the placenta tissue was obtained using the TRIzol reagent (Invitrogen) according to the manufacturer’s suggestions.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays by using 500ng total RNA
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description n/a
Data processing The data were normalised using cubic spline method with Beadstudio software
 
Submission date Dec 24, 2009
Last update date Dec 23, 2010
Contact name Dapeng Wang
Organization name Beijing Institute of Genomics
Street address No.7 Beitucheng West Road, Chaoyang District, Beijing 100029, PR China
City Beijing
ZIP/Postal code 100029
Country China
 
Platform ID GPL7350
Series (1)
GSE19649 Genomic expression profiles of blood and placenta in Chinese women with gestational diabetes

Data table header descriptions
ID_REF
VALUE Cubic spline normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_10000 86.83923 0.000727802
ILMN_100000 -3.95809 0.6790393
ILMN_100007 -1.72763 0.4985444
ILMN_100009 -4.632149 0.7328966
ILMN_10001 4336.603 0
ILMN_100010 5.890193 0.09825327
ILMN_10002 4.530255 0.1375546
ILMN_100028 37.93911 0.002911208
ILMN_100030 -10.78058 0.9759825
ILMN_100031 -0.06423726 0.3726346
ILMN_100034 -6.080168 0.8267831
ILMN_100037 -7.00744 0.8740903
ILMN_10004 1016.973 0
ILMN_10005 31.77237 0.002911208
ILMN_100054 -1.259868 0.4599709
ILMN_100059 6.008801 0.09679767
ILMN_10006 3.307052 0.1870451
ILMN_100075 -0.05958251 0.3726346
ILMN_100079 -4.910077 0.7540029
ILMN_100083 0.2512812 0.3464338

Total number of rows: 46713

Table truncated, full table size 1349 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap