|
| Status |
Public on Jan 11, 2011 |
| Title |
472 Xenograft |
| Sample type |
genomic |
| |
|
| Channel 1 |
| Source name |
472 Xenograft
|
| Organism |
Homo sapiens |
| Characteristics |
sample type: 472 Xenograft
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
DNA was extracted using Qiagen Allprep kit
|
| Label |
Cy5
|
| Label protocol |
3 ug of Total Genomic DNA was subject to DpnII digestion and random primer labeled directly incorporating appropriately conjugated cy dyes.
|
| |
|
| Channel 2 |
| Source name |
Normal Pooled DNA
|
| Organism |
Homo sapiens |
| Characteristics |
sample type: Pooled normal Genomic DNA
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
DNA was extracted using Qiagen Allprep kit
|
| Label |
Cy3
|
| Label protocol |
3 ug of Total Genomic DNA was subject to DpnII digestion and random primer labeled directly incorporating appropriately conjugated cy dyes.
|
| |
|
| |
| Hybridization protocol |
Hyb was carried out according to all array manufacturers factory protocols.
|
| Scan protocol |
Agilent G2505C Microarray Scanner
|
| Description |
N/A
|
| Data processing |
Agilent Feature Extraction Software
|
| |
|
| Submission date |
Jan 12, 2010 |
| Last update date |
Jan 11, 2011 |
| Contact name |
Alan Hunter Shain |
| E-mail(s) |
hshain@gmail.com
|
| Organization name |
University of California San Francisco
|
| Department |
Pathology and Dermatology
|
| Lab |
Boris Bastian
|
| Street address |
555 MISSION BAY SOUTH BLVD RM 282 # 3118
|
| City |
San Francisco |
| State/province |
CA |
| ZIP/Postal code |
94158-2156 |
| Country |
USA |
| |
|
| Platform ID |
GPL4091 |
| Series (1) |
| GSE19852 |
aCGH of Pancreatic Ductal Adenocarcinoma (PDAC) Cell Line and Xenografts |
|
| Relations |
| Reanalyzed by |
GSM621927 |
