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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Dec 12, 2020 |
| Title |
4990_liver_ChRO-seq |
| Sample type |
SRA |
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| Source name |
horse liver tissue
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| Organism |
Equus caballus |
| Characteristics |
mare identity: Chatty Patty (ECA_UCD_AH2 )
breed: Quarter Horse
gender: female
tissue: liver
assay: ChRO-seq
treatment: untreated
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| Extracted molecule |
total RNA |
| Extraction protocol |
The samples were not cultured. After harvesting (Burns et al., 2018) they were snap frozen in liquid N2, then processed for ChRO-seq (Chu et al., 2018a).
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| Library strategy |
OTHER |
| Library source |
transcriptomic |
| Library selection |
other |
| Instrument model |
Illumina NextSeq 500 |
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| Description |
barcode: ACTTGA
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| Data processing |
Library strategy: ChRO-seq
Sequencing data was mapped to EquCab2.0 genome build
Genome_build: EquCab2.0
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| Submission date |
Dec 11, 2020 |
| Last update date |
Dec 16, 2020 |
| Contact name |
Charles G Danko |
| Organization name |
Baker Institute
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| Street address |
Hungerford Hill Rd
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| City |
Ithaca |
| ZIP/Postal code |
14850 |
| Country |
USA |
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| Platform ID |
GPL21401 |
| Series (2) |
| GSE163048 |
Interdependence between histone marks and steps in Pol II transcription [Antczak.submission] |
| GSE163049 |
Interdependence between histone marks and steps in Pol II transcription |
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| Relations |
| BioSample |
SAMN17059007 |
| SRA |
SRX9674170 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM4971284_4990_liver_ACTTGA_R1_minus.bw |
24.7 Mb |
(ftp)(http) |
BW |
| GSM4971284_4990_liver_ACTTGA_R1_plus.bw |
25.2 Mb |
(ftp)(http) |
BW |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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