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Sample GSM5014745 Query DataSets for GSM5014745
Status Public on Sep 27, 2021
Title GOF1
Sample type RNA
 
Source name GOF papilloma 1
Organism Mus musculus
Characteristics tumor type: Papilloma
genotype: NR2F2 GOF
Extracted molecule total RNA
Extraction protocol RNA extraction from FACS isolated cells was performed using RNeasy micro kit (QIAGEN) according to the manufacturer ́s recommendations.
Label biotin
Label protocol Microarray analysis was performed at the IRB Functional Genomics Core, Barcelona. cDNA synthesis, library preparation and amplification were performed as described in Gonzalez-Roca, E. et al., 2010. A Mouse Genome 430pm strip Affymetrix array was used and the data were normalized using RMA algorithm
 
Hybridization protocol Microarray analysis was performed at the IRB Functional Genomics Core, Barcelona. cDNA synthesis, library preparation and amplification were performed as described in Gonzalez-Roca, E. et al., 2010. A Mouse Genome 430pm strip Affymetrix array was used and the data were normalized using RMA algorithm
Scan protocol Microarray analysis was performed at the IRB Functional Genomics Core, Barcelona. cDNA synthesis, library preparation and amplification were performed as described in Gonzalez-Roca, E. et al., 2010. A Mouse Genome 430pm strip Affymetrix array was used and the data were normalized using RMA algorithm
Description Gene expression data from Nr2f2 GOF
Data processing To normalize the data, the Robust Multi-array Average expression (RMA) method from the affy package was used.
 
Submission date Jan 11, 2021
Last update date Sep 27, 2021
Contact name Yura Song
E-mail(s) yura.song@ulb.be
Organization name Université Libre de Bruxelles
Lab Laboratory of Stem Cells and Cancer
Street address 808, route de Lennik
City Bruxelles
ZIP/Postal code 1070
Country Belgium
 
Platform ID GPL11180
Series (2)
GSE164602 NR2F2 controls malignant squamous cell carcinoma state by promoting stemness and invasion and repressing differentiation III
GSE164605 NR2F2 controls malignant squamous cell carcinoma state by promoting stemness and invasion and repressing differentiation

Data table header descriptions
ID_REF
VALUE log2-transformed intensity

Data table
ID_REF VALUE
1415670_PM_at 8.87692
1415671_PM_at 9.43865
1415672_PM_at 6.76745
1415673_PM_at 7.8461
1415674_PM_a_at 6.88267
1415675_PM_at 6.55881
1415676_PM_a_at 9.98131
1415677_PM_at 7.649
1415678_PM_at 8.14956
1415679_PM_at 10.005
1415680_PM_at 6.79833
1415681_PM_at 8.22025
1415682_PM_at 6.22045
1415683_PM_at 8.19175
1415684_PM_at 3.18851
1415685_PM_at 3.63183
1415686_PM_at 6.91764
1415687_PM_a_at 8.39978
1415688_PM_at 7.71812
1415689_PM_s_at 3.69942

Total number of rows: 45141

Table truncated, full table size 983 Kbytes.




Supplementary file Size Download File type/resource
GSM5014745_GOF1bis.cel.gz 2.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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