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Sample GSM505716 Query DataSets for GSM505716
Status Public on Jan 20, 2011
Title 4493594358A
Sample type RNA
 
Source name SN, control
Organism Homo sapiens
Characteristics age: 91
tissue: substantia nigra
diagnosis: normal
sample type: control
gender: M
Treatment protocol None.
Growth protocol Substantia nigras were snap frozen.
Extracted molecule total RNA
Extraction protocol Trizol (Scherzer et al., Proc Natl Acad Sci 105, 2008).
Label biotin
Label protocol Illumina Ambion kit.
 
Hybridization protocol Standard Illumina hybridization protocol.
Scan protocol Standard Illumina scan protocol.
Description 4493594358A
Data processing The data were normalized using average normalization implemented in GenomeStudio.

Non-normalized data is available in 'GSE20159_non-normalized.txt', which is linked to the Series GSE20159 record as a supplementary file.
 
Submission date Feb 02, 2010
Last update date Aug 16, 2011
Contact name Bin Zheng
Organization name Brigham and Women's hospital
Department Center for Neurologic Diseases
Street address 65 Landsdowne Street
City Cambridge
State/province MA
ZIP/Postal code 02139
Country USA
 
Platform ID GPL6947
Series (2)
GSE20159 Systematic meta-analysis and replication of genome-wide expression studies of Parkinson's disease: 1
GSE20186 Systematic meta-analysis and replication of genome-wide expression studies of Parkinson's disease

Data table header descriptions
ID_REF
VALUE Average-normalized value
Dection Pval

Data table
ID_REF VALUE Dection Pval
ILMN_1762337 21.29838 0.914361
ILMN_2055271 32.69643 0.08695652
ILMN_1736007 24.4115 0.6719368
ILMN_2383229 27.65826 0.3438735
ILMN_1806310 23.33225 0.7773386
ILMN_1779670 28.30169 0.2951252
ILMN_2321282 36.47317 0.03820817
ILMN_1671474 24.46604 0.6640316
ILMN_1772582 28.28426 0.2951252
ILMN_1735698 29.16559 0.2318841
ILMN_1653355 32.76549 0.08695652
ILMN_1717783 24.30492 0.685112
ILMN_1705025 24.72202 0.6442688
ILMN_1814316 35.50751 0.04479579
ILMN_2359168 32.01806 0.1001318
ILMN_1731507 24.84826 0.627141
ILMN_1787689 30.46008 0.1673254
ILMN_1745607 838.5865 0
ILMN_2136495 40.18356 0.02371541
ILMN_1668111 20.81243 0.9393939

Total number of rows: 48803

Table truncated, full table size 1465 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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