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Sample GSM50900 Query DataSets for GSM50900
Status Public on Jul 03, 2005
Title Colon_7794
Sample type genomic
 
Channel 1
Source name Cy5, total input DNA
Organism Homo sapiens
Extracted molecule genomic DNA
 
Channel 2
Source name Cy3, methylated DNA
Organism Homo sapiens
Extracted molecule genomic DNA
 
 
Description Methylated DNA prepared by MeDIP (Cy3) is co-hybridized with total genomic DNA (Cy5). The ratio between Cy3 and Cy5 signal is calculated for all high quality features. Ratios were normalized and log2 transformed using Genepix standard settings.
 
Submission date May 12, 2005
Last update date Jun 23, 2005
Contact name Michael Weber
E-mail(s) michael.weber@fmi.ch
Phone +41 (61) 697-78270
Organization name Friedrich Miescher Institute
Department Epigenetics
Lab Schubeler
Street address Maulbeerstrasse 66
City Basel
ZIP/Postal code CH 4058
Country Switzerland
 
Platform ID GPL2040
Series (1)
GSE2653 CpG island methylation

Data table header descriptions
ID_REF
VALUE log2 ratio
F635 Median Cy5 signal
B635 Cy5 background
F532 Median Cy3 signal
B532 Cy3 background
Flags Flags
X X position
Y Y position
Dia. Diameter

Data table
ID_REF VALUE F635 Median B635 F532 Median B532 Flags X Y Dia.
7_H_7 2054 174 1736 314 -100 2760 4610 130
7_H_1 224 170 567 298 -100 2940 4610 80
7_F_7 203 156 537 265 -100 3140 4610 100
7_F_1 287 140 617 256 -100 3340 4610 100
7_D_7 250 155 601 272 -100 3560 4620 80
7_D_1 353 152 810 257 -100 3740 4610 90
7_B_7 0.297 939 155 1144 225 0 3950 4610 100
7_B_1 1.039 383 150 647 223 0 4150 4610 100
3_H_7 228 147 383 201 -100 4350 4610 80
3_H_1 345 148 521 202 -100 4540 4600 80
3_F_7 0.453 394 148 500 207 0 4740 4600 90
3_F_1 0.647 9041 160 14072 214 0 4950 4610 100
3_D_7 328 158 395 170 -100 5150 4600 90
3_D_1 195 153 212 174 -100 5360 4610 110
3_B_7 256 154 321 163 -100 5550 4610 90
3_B_1 224 169 259 185 -100 5760 4610 80
15_H_7 235 140 499 326 -100 2730 4810 70
15_H_1 227 179 433 356 -100 2950 4790 60
15_F_7 259 154 411 283 -100 3160 4800 70
15_F_1 236 164 451 249 -100 3340 4810 80

Total number of rows: 12192

Table truncated, full table size 544 Kbytes.




Supplementary data files not provided
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