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Sample GSM510096 Query DataSets for GSM510096
Status Public on Mar 02, 2011
Title Activin+Follistatin 2
Sample type RNA
 
Source name Total RNA from primary cultured mouse granulosa cells
Organism Mus musculus
Characteristics agent: Activin+Follistatin 2
cell type: granulosa cells in primary cultures
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Biological replicate 2 of 4, granulosa cells in primary cultures were collected from a pool of 14-20 ovaries from days 21-23 old immature mice
Data processing The data was preprocessed by Bioconductor lumi package (version 1.2.0). It was vst transformed and quantile normalized.
 
Submission date Feb 16, 2010
Last update date Mar 02, 2011
Contact name Jingjing Kipp
E-mail(s) j-kipp@northwestern.edu
Organization name Northwestern University
Street address 2205 Tech Dr.
City Evanston
State/province IL
ZIP/Postal code 60208
Country USA
 
Platform ID GPL4055
Series (1)
GSE20583 Global Profiling of Activin Target Genes in Mouse Granulosa Cells

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
10181072_239_rc-S 7.04487418387503 51.4 6.8 0.76670792 36
10181072_290-S 7.18212703194396 74.9 5.5 0.28774752 39
10181072_290_rc-S 7.16341267133983 71.7 7.4 0.33601485 40
10181072_311-S 7.0311324508984 48.9 4.2 0.81497525 40
10181072_311_rc-S 7.02299450074678 47.4 6.3 0.84158416 31
10181072_418-S 6.95225232985331 33.8 4.6 0.97277228 33
10181072_418_rc-S 7.12838816580592 65.8 6 0.44678218 35
10181072_486-S 7.04598351139336 51.6 6.3 0.75928218 35
10181072_486_rc-S 7.1739765243802 73.5 6.9 0.30445545 39
17974913_3385-S 7.20163174543074 78.3 5.9 0.24071782 53
17974913_3385_rc-S 7.15928312105182 71 7.6 0.35024752 40
17974913_3999_rc-S 6.96440250495981 36.2 3.6 0.96658416 38
17974913_4071-S 7.01493290566923 45.9 5.5 0.86014851 41
17974913_4071_rc-S 6.94671955892619 32.7 3.9 0.97586634 43
17974913_4426-S 7.06451131106845 54.9 5.5 0.6875 41
17974913_4426_rc-S 7.03276949256943 49.2 4 0.80940594 51
17974913_4962-S 6.95225232985331 33.8 3.8 0.97215347 44
17974913_4962_rc-S 7.10876274204618 62.5 7.2 0.50680693 42
18S_rRNA_X00686_301-S 15.9160776299025 62882.8 1988.8 0 38
18S_rRNA_X00686_523-S 14.6644898829577 29188.8 933.6 0 33

Total number of rows: 46116

Table truncated, full table size 2688 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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