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Sample GSM510099 Query DataSets for GSM510099
Status Public on Mar 02, 2011
Title Activin+Follistatin 3
Sample type RNA
 
Source name Total RNA from primary cultured mouse granulosa cells
Organism Mus musculus
Characteristics agent: Activin+Follistatin 3
cell type: granulosa cells in primary cultures
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Biological replicate 3 of 4, granulosa cells in primary cultures were collected from a pool of 14-20 ovaries from days 21-23 old immature mice
Data processing The data was preprocessed by Bioconductor lumi package (version 1.2.0). It was vst transformed and quantile normalized.
 
Submission date Feb 16, 2010
Last update date Mar 02, 2011
Contact name Jingjing Kipp
E-mail(s) j-kipp@northwestern.edu
Organization name Northwestern University
Street address 2205 Tech Dr.
City Evanston
State/province IL
ZIP/Postal code 60208
Country USA
 
Platform ID GPL4055
Series (1)
GSE20583 Global Profiling of Activin Target Genes in Mouse Granulosa Cells

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
10181072_239_rc-S 7.10909998727129 72.6 5.9 0.50804455 49
10181072_290-S 7.19518669963852 90.7 7.7 0.22091584 41
10181072_290_rc-S 7.10018521172534 70.8 6.5 0.54393564 41
10181072_311-S 7.02968495904387 56.9 5.4 0.80259901 34
10181072_311_rc-S 7.04308913291493 59.5 5.1 0.76237624 29
10181072_418-S 6.93556808992034 39.2 3 0.97277228 29
10181072_418_rc-S 7.22390810493315 97.1 8.4 0.15965347 49
10181072_486-S 7.10415408662034 71.6 6.3 0.52846535 37
10181072_486_rc-S 7.15515483025595 82.1 7.7 0.33725248 34
17974913_3385-S 7.19016057113999 89.6 7.8 0.23081683 43
17974913_3385_rc-S 6.98353618457679 48.1 4.3 0.91893564 39
17974913_3999_rc-S 7.08971752268672 68.7 6.7 0.59220297 38
17974913_4071-S 7.08119387268168 67 7.8 0.62314356 34
17974913_4071_rc-S 6.96483291092215 44.6 4.3 0.9480198 35
17974913_4426-S 7.07515185333169 65.8 5.4 0.64913366 40
17974913_4426_rc-S 7.17118331011735 85.5 8 0.27970297 47
17974913_4962-S 6.93884477162317 39.8 2.9 0.97091584 41
17974913_4962_rc-S 7.14368945014409 79.7 8.8 0.37438119 37
18S_rRNA_X00686_301-S 15.8383043203963 67301.2 1511.9 0 35
18S_rRNA_X00686_523-S 14.7165649427227 35025.9 1154.8 0 40

Total number of rows: 46116

Table truncated, full table size 2696 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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