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Sample GSM513628 Query DataSets for GSM513628
Status Public on Feb 01, 2011
Title WT-HCG2
Sample type RNA
 
Source name Granulosa Cell, 44-46hr PMSG, 6hr hCG
Organism Mus musculus
Characteristics strain: C57BL/6J;129S5/SvEvBrd
genome/variation: wild type
cell type: granulosa cell
treatment group: 44-46hr PMSG, 6hr hCG
Treatment protocol Granulosa cells collected by puncture of antral follicles; cells processed immediately, no further treatment
Growth protocol 21-day mice were injected with 5IU PMSG for 44-46 hours or 44-46 hours PMSG followed by 6 hr 5IU hCG
Extracted molecule total RNA
Extraction protocol RNA extracted using Qiagen RNeasy Kit
Label biotin
Label protocol Affymetrix protocols at Baylor Microarray Core, BCM
 
Hybridization protocol Affymetrix protocols at Baylor Microarray Core, BCM
Scan protocol Affymetrix protocols at Baylor Microarray Core, BCM
Description hnl_MM_2523_MA2_9750.cel
Data processing GCRMA (Genespring 10.0.2, default parameters, baseline transformed to median of all samples)
 
Submission date Feb 22, 2010
Last update date Feb 01, 2011
Contact name Martin Matzuk
Organization name Baylor College of Medicine
Street address One Baylor Plaza
City Houston
State/province TX
ZIP/Postal code 77030
Country USA
 
Platform ID GPL1261
Series (1)
GSE20466 Comparison of granulosa cells from WT and Inha KO mice following gonadotropin stimulation

Data table header descriptions
ID_REF
VALUE log2 GCRMA (Genespring 10.0.2) normalized signal intensity

Data table
ID_REF VALUE
AFFX-BioB-5_at 1.0311475
AFFX-BioB-M_at 1.1130996
AFFX-BioB-3_at 1.1185312
AFFX-BioC-5_at 1.2123566
AFFX-BioC-3_at 0.82262707
AFFX-BioDn-5_at 0.41978836
AFFX-BioDn-3_at 0.30898666
AFFX-CreX-5_at 0.57366467
AFFX-CreX-3_at 0.41167164
AFFX-DapX-5_at -0.019631386
AFFX-DapX-M_at -0.00598836
AFFX-DapX-3_at -0.021554232
AFFX-LysX-5_at -0.022873163
AFFX-LysX-M_at -0.029386282
AFFX-LysX-3_at -0.028209925
AFFX-PheX-5_at -0.020587683
AFFX-PheX-M_at -0.020255089
AFFX-PheX-3_at -0.022355795
AFFX-ThrX-5_at -0.022659302
AFFX-ThrX-M_at -0.014353275

Total number of rows: 45101

Table truncated, full table size 1027 Kbytes.




Supplementary file Size Download File type/resource
GSM513628.cel.gz 6.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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