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Sample GSM513629 Query DataSets for GSM513629
Status Public on Feb 01, 2011
Title WT-HCG3
Sample type RNA
 
Source name Granulosa Cell, 44-46hr PMSG, 6hr hCG
Organism Mus musculus
Characteristics strain: C57BL/6J;129S5/SvEvBrd
genome/variation: wild type
cell type: granulosa cell
treatment group: 44-46hr PMSG, 6hr hCG
Treatment protocol Granulosa cells collected by puncture of antral follicles; cells processed immediately, no further treatment
Growth protocol 21-day mice were injected with 5IU PMSG for 44-46 hours or 44-46 hours PMSG followed by 6 hr 5IU hCG
Extracted molecule total RNA
Extraction protocol RNA extracted using Qiagen RNeasy Kit
Label biotin
Label protocol Affymetrix protocols at Baylor Microarray Core, BCM
 
Hybridization protocol Affymetrix protocols at Baylor Microarray Core, BCM
Scan protocol Affymetrix protocols at Baylor Microarray Core, BCM
Description hnl_MM_2523_MA2_9751.cel
Data processing GCRMA (Genespring 10.0.2, default parameters, baseline transformed to median of all samples)
 
Submission date Feb 22, 2010
Last update date Feb 01, 2011
Contact name Martin Matzuk
Organization name Baylor College of Medicine
Street address One Baylor Plaza
City Houston
State/province TX
ZIP/Postal code 77030
Country USA
 
Platform ID GPL1261
Series (1)
GSE20466 Comparison of granulosa cells from WT and Inha KO mice following gonadotropin stimulation

Data table header descriptions
ID_REF
VALUE log2 GCRMA (Genespring 10.0.2) normalized signal intensity

Data table
ID_REF VALUE
AFFX-BioB-5_at 1.2360692
AFFX-BioB-M_at 1.1615062
AFFX-BioB-3_at 1.3173914
AFFX-BioC-5_at 1.2986784
AFFX-BioC-3_at 0.9406061
AFFX-BioDn-5_at 0.3840418
AFFX-BioDn-3_at 0.45691872
AFFX-CreX-5_at 0.54656696
AFFX-CreX-3_at 0.43056488
AFFX-DapX-5_at -0.005240917
AFFX-DapX-M_at 0.003020287
AFFX-DapX-3_at -0.001467943
AFFX-LysX-5_at -0.005668163
AFFX-LysX-M_at -0.012259483
AFFX-LysX-3_at -0.001629353
AFFX-PheX-5_at -0.01156044
AFFX-PheX-M_at -0.011878252
AFFX-PheX-3_at -0.017051458
AFFX-ThrX-5_at 0.003220081
AFFX-ThrX-M_at -0.006548166

Total number of rows: 45101

Table truncated, full table size 1020 Kbytes.




Supplementary file Size Download File type/resource
GSM513629.cel.gz 6.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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