|
| Status |
Public on Aug 18, 2021 |
| Title |
CCS3409 |
| Sample type |
RNA |
| |
|
| Source name |
thigh
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: solid tumor
sarcoma type: Clear Cell Sarcoma (GI-CCS)
fusion type: EWSR1-ATF1
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was extracted from tumor samples using Trizol.
|
| Label |
biotin
|
| Label protocol |
Samples were labeled according to manufacturer's instructions (Affymetrix Santa Clara, CA).
|
| |
|
| Hybridization protocol |
10 micrograms of labeled and fragmented cRNA were hybridized onto a human genome U133A expression array.
|
| Scan protocol |
Posthybridization staining, washing, and scanning were done according to manufacturers's instruction (Affymetrix).
|
| Description |
CHP file not available for this sample.
|
| Data processing |
The raw expression data were derived using the Affymetrix Microarray analysis 5.0 (MAS 5.0) software. The data were normalized using a scaling target intensity of 500 to account for differences in the global chip intensity. The expression values were transformed using the logarithm base two.
|
| |
|
| Submission date |
Mar 09, 2021 |
| Last update date |
Aug 18, 2021 |
| Contact name |
Fabio Vanoli |
| E-mail(s) |
vanoli1977@gmail.com
|
| Organization name |
MSKCC
|
| Street address |
1250 1st Avenue
|
| City |
New York |
| State/province |
NY |
| ZIP/Postal code |
10065 |
| Country |
USA |
| |
|
| Platform ID |
GPL29829 |
| Series (2) |
| GSE168560 |
Expression data from Sarcoma Tumors expressing the EWSR1-CREB fusions [microarray] |
| GSE168562 |
Expression data from Sarcoma Tumors expressing the EWSR1-CREB fusions |
|
