|
Status |
Public on Mar 17, 2021 |
Title |
Monkey sperm - Maltreated 1 |
Sample type |
SRA |
|
|
Source name |
sperm cells
|
Organism |
Macaca mulatta |
Characteristics |
age: 5.67 yr group: Maltreated
|
Treatment protocol |
PureSperm 40/80 density gradient
|
Extracted molecule |
total RNA |
Extraction protocol |
TRIzol extraction protocol RNA libraries were prepared for sequencing using standard Illumina protocols
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina HiSeq 3000 |
|
|
Data processing |
alignment (STAR) counts stranded reads aligned to MacaM genome (featureCounts) determine gene coverage by reads (bedtools) Genome_build: MacaM Supplementary_files_format_and_content: comma-separated text file, read counts, gene coverage
|
|
|
Submission date |
Mar 16, 2021 |
Last update date |
Mar 17, 2021 |
Contact name |
Dias Brian |
Organization name |
Children's Hospital Los Angeles
|
Street address |
4640 West Sunset Boulevard
|
City |
Los Angeles |
ZIP/Postal code |
90027 |
Country |
USA |
|
|
Platform ID |
GPL23804 |
Series (1) |
GSE168978 |
Profiling non-human primate germline RNA to understand the legacy of early life stress |
|
Relations |
BioSample |
SAMN18318646 |
SRA |
SRX10354425 |