|
| Status |
Public on Mar 19, 2021 |
| Title |
genomic DNA derived from blood samples from survivor of childhood cancer [SJNHL018780_G1] |
| Sample type |
genomic |
| |
|
| Source name |
peripheral blood mononuclear cells
|
| Organism |
Homo sapiens |
| Characteristics |
gender: Female
age: 40.7
anthracyclines: 1
alkylating agent,classic: 1
corticosteroids: 0
epipodophyllotoxins: 0
vinca alkaloids: 1
asparaginase enzymes: 0
antimetabolites: 1
brainrt: 0
chestrt: 0
abdominalrt: 0
pelvicrt: 0
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
DNA extracted from periperihal blood mononuclear cells using the QIAamp DNA Blood Mini Kit (Qiagen cat#51106)
|
| Label |
Cy5 and Cy3
|
| Label protocol |
Standard Illumina Protocal
|
| |
|
| Hybridization protocol |
Bisulphite converted DNA was amplified, fragmented and hybridized to Illumina Infinium MethylationEPIC BeadChips using standard Illumina protocal
|
| Scan protocol |
Arrays were stained and scanned using the Illumina HiScan system with standard recommended Illumina scanner setting
|
| Description |
blood from survivor of childhood cancer
|
| Data processing |
GenomeStudio V2011.1
Unmethylated and methylated signal intensities provided in the SJLIFE_IlluminaEPIC_2052samples_GEO_03162021_signal.txt
Average Beta provided in the SJLIFE_IlluminaEPIC_2052samples_GEO_03162021_processed.txt
|
| |
|
| Submission date |
Mar 18, 2021 |
| Last update date |
Mar 22, 2021 |
| Contact name |
Zhaoming Wang |
| E-mail(s) |
zhaoming.wang@stjude.org
|
| Phone |
(901) 595-0232
|
| Organization name |
St. Jude Children's Research Hospital
|
| Department |
Epidemiology & Cancer Control
|
| Street address |
262 Danny Thomas Place
|
| City |
Memphis |
| State/province |
TN |
| ZIP/Postal code |
38105 |
| Country |
USA |
| |
|
| Platform ID |
GPL23976 |
| Series (1) |
| GSE169156 |
Persistent Variations of Blood DNA Methylation Associated with Treatment Exposures and Risk for Cardiometabolic Outcomes in Childhood Cancer Survivors |
|
