|
Status |
Public on Mar 19, 2021 |
Title |
genomic DNA derived from blood samples from survivor of childhood cancer [SJSTS019601_G1] |
Sample type |
genomic |
|
|
Source name |
peripheral blood mononuclear cells
|
Organism |
Homo sapiens |
Characteristics |
gender: Male age: 46.9 anthracyclines: 0 alkylating agent,classic: 0 corticosteroids: 0 epipodophyllotoxins: 0 vinca alkaloids: 0 asparaginase enzymes: 0 antimetabolites: 0 brainrt: 0 chestrt: 0 abdominalrt: 0 pelvicrt: 0
|
Extracted molecule |
genomic DNA |
Extraction protocol |
DNA extracted from periperihal blood mononuclear cells using the QIAamp DNA Blood Mini Kit (Qiagen cat#51106)
|
Label |
Cy5 and Cy3
|
Label protocol |
Standard Illumina Protocal
|
|
|
Hybridization protocol |
Bisulphite converted DNA was amplified, fragmented and hybridized to Illumina Infinium MethylationEPIC BeadChips using standard Illumina protocal
|
Scan protocol |
Arrays were stained and scanned using the Illumina HiScan system with standard recommended Illumina scanner setting
|
Description |
blood from survivor of childhood cancer
|
Data processing |
GenomeStudio V2011.1 Unmethylated and methylated signal intensities provided in the SJLIFE_IlluminaEPIC_2052samples_GEO_03162021_signal.txt Average Beta provided in the SJLIFE_IlluminaEPIC_2052samples_GEO_03162021_processed.txt
|
|
|
Submission date |
Mar 18, 2021 |
Last update date |
Mar 22, 2021 |
Contact name |
Zhaoming Wang |
E-mail(s) |
zhaoming.wang@stjude.org
|
Phone |
(901) 595-0232
|
Organization name |
St. Jude Children's Research Hospital
|
Department |
Epidemiology & Cancer Control
|
Street address |
262 Danny Thomas Place
|
City |
Memphis |
State/province |
TN |
ZIP/Postal code |
38105 |
Country |
USA |
|
|
Platform ID |
GPL23976 |
Series (1) |
GSE169156 |
Persistent Variations of Blood DNA Methylation Associated with Treatment Exposures and Risk for Cardiometabolic Outcomes in Childhood Cancer Survivors |
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