|
| Status |
Public on Apr 19, 2021 |
| Title |
AD169 3 dpi UL84 input |
| Sample type |
SRA |
| |
|
| Source name |
HCMV DNA
|
| Organism |
Homo sapiens |
| Characteristics |
dose: 3 dpi
agent: HCMV (HHV-5) stain AD169
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
ChIP was performed using Diagenode iDeal ChiP-seq kit for Transcription Factors (Diagenode, cat. C01010055).
Libraries were created from ChIP DNA and input DNA samples using the NEXTflex Illumina ChIP-Seq Library Preparation Kit (Bioo Scientific cat. 5143-01).
|
| |
|
| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina NextSeq 500 |
| |
|
| Description |
AD169 3 dpi UL84 input
|
| Data processing |
CLC genomics workbench 8.5.1
Sequencing reads were aligned to the HCMV genome using CLC genomics workbench map reads to reference tool
Genome_build: HCMV assesion number (GU179289)
Supplementary_files_format_and_content: Data was aligned to reference genome (GU179289) using CLC genomics workbench
|
| |
|
| Submission date |
Mar 25, 2021 |
| Last update date |
Apr 19, 2021 |
| Contact name |
Cyprian Rossettto |
| Organization name |
University of Nevada, Reno
|
| Department |
Microbiology & Immunology
|
| Street address |
1664 North Virginia Street
|
| City |
Reno |
| State/province |
NV |
| ZIP/Postal code |
89557 |
| Country |
USA |
| |
|
| Platform ID |
GPL18573 |
| Series (1) |
| GSE169634 |
HCMV infected Human Fibroblasts UL84 IE2 ChIPSeq |
|
| Relations |
| BioSample |
SAMN18491559 |
| SRA |
SRX10444400 |
