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GEO accession:
Sample GSM522405
Query DataSets for GSM522405
Status
Public on Dec 31, 2010
Title
B3K_N3
Sample type
RNA
Source name
kidney
Organism
Homo sapiens
Characteristics
tissue: normal
Extracted molecule
total RNA
Extraction protocol
Trizol
Label
biotin
Label protocol
standard Affy protocol
Hybridization protocol
standard Affy protocol
Scan protocol
standard Affy protocol
Description
Normal kideny, techincal replicate 3
Data processing
GCRMA processed data utilizing custom CDF-files for Ensembl genes (R package hs133phsensg).
Submission date
Mar 15, 2010
Last update date
Dec 31, 2010
Contact name
Sakari Vanharanta
E-mail(s)
sakari.vanharanta@helsinki.fi
Organization name
University of Helsinki
Department
Translational Cancer Medicine Program
Lab
Vanharanta
Street address
Haartmaninkatu 8
City
Helsinki
ZIP/Postal code
00014
Country
Finland
Platform ID
GPL10184
Series (1)
GSE20896
Gene expression profile of HLRCC associated renal cell cancer
Data table header descriptions
ID_REF
VALUE
GCRMA
Data table
ID_REF
VALUE
AFFX-BioB-3_at
8.204509138
AFFX-BioB-5_at
8.35222014
AFFX-BioB-M_at
8.92459256
AFFX-BioC-3_at
10.54302778
AFFX-BioC-5_at
9.577609438
AFFX-BioDn-3_at
12.39825533
AFFX-BioDn-5_at
12.13239374
AFFX-CreX-3_at
14.59796683
AFFX-CreX-5_at
14.73851953
AFFX-DapX-3_at
8.441281448
AFFX-DapX-5_at
7.451656271
AFFX-DapX-M_at
8.536027495
AFFX-HSAC07/X00351_3_at
13.86328293
AFFX-HSAC07/X00351_5_at
12.28070062
AFFX-HSAC07/X00351_M_at
12.66881047
AFFX-HUMGAPDH/M33197_3_at
14.26099596
AFFX-HUMGAPDH/M33197_5_at
13.83395152
AFFX-HUMGAPDH/M33197_M_at
13.74724743
AFFX-HUMISGF3A/M97935_3_at
8.204547673
AFFX-HUMISGF3A/M97935_5_at
5.195349899
Total number of rows:
27728
Table truncated, full table size
867 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM522405.CEL.gz
4.8 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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