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| Status |
Public on Jun 01, 2024 |
| Title |
N1_FC [N1_26] |
| Sample type |
SRA |
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| Source name |
N1_FC_larvae heads
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| Organism |
Nicrophorus vespilloides |
| Characteristics |
group: N1_FC
tissue: larvae heads
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| Extracted molecule |
total RNA |
| Extraction protocol |
NOT PROVIED; REQUESTED
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2000 |
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| Description |
processed data file: gene_count_matrix.csv
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| Data processing |
RNAseq samples were processed as described in Pertea et al. 2016 Nature Methods using the HiSat/StringTie pipeline
Bisulfite sequencing samples were quality checked (FastQC), adaptor and quality trimmed (FastQC), mapped with Bismark and were quantified following deduplication.
Genome_build: GCF_001412225.1
Supplementary_files_format_and_content: gene level counts are presented in a counts matrix for all samples
Supplementary_files_format_and_content: bismark coverage files are provided for each sample
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| Submission date |
Apr 09, 2021 |
| Last update date |
Jun 01, 2024 |
| Contact name |
Rahia Mashoodh |
| Organization name |
University of Cambridge
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| Department |
Zoology
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| Street address |
Downing Street, Zoology, University of Cambridge
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| City |
CAMBRIDGE |
| State/province |
Cambridgeshire |
| ZIP/Postal code |
CB2 3EJ |
| Country |
United Kingdom |
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| Platform ID |
GPL20831 |
| Series (1) |
| GSE171776 |
Evolved differences in RNA and DNA methylation in the burying beetle |
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| Relations |
| BioSample |
SAMN18681908 |
| SRA |
SRX10563728 |
| Supplementary data files not provided |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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