|
| Status |
Public on Jul 02, 2021 |
| Title |
DHO1_1C |
| Sample type |
SRA |
| |
|
| Source name |
Natural killer cell
|
| Organism |
Macaca mulatta |
| Characteristics |
rhcmv status: pos
Sex: F
animal id: 44983
age (year): 2.17
fragmentation time (sec): 180
|
| Treatment protocol |
flow cytometry sorting into RNAlater
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Norgen Total RNA Purification Micro Kit
Lexogen QuantSeq 3' mRNA-Seq Library Prep Kit
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
RACE |
| Instrument model |
Illumina HiSeq 4000 |
| |
|
| Data processing |
STAR version 2.7 was used to align sequences to Macaca_mulatta.Mmul_10.dna.primary_assembly and annotated with Macaca_mulatta.Mmul_10.99.gtf file
Genome_build: Mmul_10
Supplementary_files_format_and_content: raw_counts.csv is a matrix containing features annotated with Ensembl ID and raw gene counts for each sample.
|
| |
|
| Submission date |
Apr 13, 2021 |
| Last update date |
Jul 02, 2021 |
| Contact name |
Dennis J. Hartigan-O'Connor |
| E-mail(s) |
dhartigan@ucdavis.edu
|
| Organization name |
University of California, Davis
|
| Department |
Medical Microbiology and Immunology
|
| Street address |
3146 One Shields Avenue, Tupper Hall
|
| City |
Sacramento |
| State/province |
CALIFORNIA |
| ZIP/Postal code |
95817 |
| Country |
USA |
| |
|
| Platform ID |
GPL23949 |
| Series (1) |
| GSE171978 |
Cytomegalovirus-mediated expansion of IL-15-responsive innate-memory cells with SIV killing function |
|
| Relations |
| BioSample |
SAMN18723067 |
| SRA |
SRX10592266 |
