|
| Status |
Public on Aug 27, 2021 |
| Title |
Cancer-Associated Fibroblast [DanaCosteaud12] |
| Sample type |
RNA |
| |
|
| Source name |
Oral Squamous Cell Carcinoma lesions
|
| Organism |
Homo sapiens |
| Characteristics |
cell type: Cancer-Associated Fibroblast
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
|
| Label |
biotin
|
| Label protocol |
Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays.
|
| |
|
| Hybridization protocol |
Standard Illumina hybridization protocol.
|
| Scan protocol |
Standard Illumina scanning protocol.
|
| Description |
DanaCosteaud12
|
| Data processing |
The data were normalised using quantile normalisation with IlluminaGUI in R.
|
| |
|
| Submission date |
Apr 18, 2021 |
| Last update date |
Aug 27, 2021 |
| Contact name |
Saroj Rajthala |
| E-mail(s) |
pasa_saroj_7@hotmail.com
|
| Organization name |
University of Bergen
|
| Department |
Department of Clinical Medicine
|
| Lab |
Oral Pathology
|
| Street address |
Jonas Lies vei 87
|
| City |
Bergen |
| State/province |
Hordaland |
| ZIP/Postal code |
N-5021 |
| Country |
Norway |
| |
|
| Platform ID |
GPL8179 |
| Series (1) |
| GSE172287 |
micro-RNA deregulation in cancer-associated fibroblasts in oral squamous cell carcinoma |
|
