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Sample GSM5265586 Query DataSets for GSM5265586
Status Public on Apr 27, 2021
Title Sample181.Bottlenose dolphin.203531420011_R02C01
Sample type genomic
 
Source name Blood
Organism Tursiops truncatus
Characteristics basename: 203531420011_R02C01
canbeusedforagingstudies: yes
Sex: Male
tissue: Blood
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from tissues
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted
Label Cy3,Cy5
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to the the Beadchip HorvathMammalMethylChip40 using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA methylation from tissue=Blood species=Bottlenose dolphin
Data processing SeSaMe normalization as described in W. Zhou et al 2018. PMID: 30085201
 
Submission date Apr 26, 2021
Last update date Apr 27, 2021
Contact name Steve Horvath
E-mail(s) shorvath@altoslabs.com
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
 
Platform ID GPL28271
Series (1)
GSE173330 Methylation clocks for age estimation in toothed whales and dolphins

Data table header descriptions
ID_REF
VALUE SeSaMe normalized beta values.

Data table
ID_REF VALUE
cg00000165 0.338356073651425
cg00001209 0.930697609775957
cg00001364 0.917075739710027
cg00001582 0.0469304899967917
cg00002920 0.699324024719139
cg00003994 0.0341772836075388
cg00004555 0.123979702496407
cg00005112 0.86560714174381
cg00005271 0.971810888947962
cg00006213 0.96881523079483
cg00008998 0.94488171644482
cg00009248 0.0396881346019436
cg00009319 0.948884327467185
cg00010445 0.306819129255903
cg00010903 0.946672778755923
cg00010926 0.958344022024691
cg00010977 0.952187041507457
cg00012521 0.960885352712358
cg00012879 0.872760433019934
cg00013189 0.0933286028560624

Total number of rows: 37554

Table truncated, full table size 1067 Kbytes.




Supplementary file Size Download File type/resource
GSM5265586_203531420011_R02C01_Grn.idat.gz 384.6 Kb (ftp)(http) IDAT
GSM5265586_203531420011_R02C01_Red.idat.gz 382.1 Kb (ftp)(http) IDAT
Processed data included within Sample table

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