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Sample GSM5265588 Query DataSets for GSM5265588
Status Public on Apr 27, 2021
Title Sample183.Bottlenose dolphin.203531420011_R04C01
Sample type genomic
 
Source name Blood
Organism Tursiops truncatus
Characteristics basename: 203531420011_R04C01
canbeusedforagingstudies: yes
Sex: Male
tissue: Blood
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from tissues
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted
Label Cy3,Cy5
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to the the Beadchip HorvathMammalMethylChip40 using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA methylation from tissue=Blood species=Bottlenose dolphin
Data processing SeSaMe normalization as described in W. Zhou et al 2018. PMID: 30085201
 
Submission date Apr 26, 2021
Last update date Apr 27, 2021
Contact name Steve Horvath
E-mail(s) shorvath@altoslabs.com
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
 
Platform ID GPL28271
Series (1)
GSE173330 Methylation clocks for age estimation in toothed whales and dolphins

Data table header descriptions
ID_REF
VALUE SeSaMe normalized beta values.

Data table
ID_REF VALUE
cg00000165 0.272393679710561
cg00001209 0.927569429369357
cg00001364 0.920912025803886
cg00001582 0.0496643536433864
cg00002920 0.769886470258081
cg00003994 0.0326929181257712
cg00004555 0.103845706684569
cg00005112 0.862805852251213
cg00005271 0.97383027061932
cg00006213 0.943303542344649
cg00008998 0.953985203432821
cg00009248 0.0365752148578115
cg00009319 0.935465676098731
cg00010445 0.3093687465294
cg00010903 0.958753602946643
cg00010926 0.957387595575698
cg00010977 0.952401380874256
cg00012521 0.958477716649332
cg00012879 0.856397988503977
cg00013189 0.0924013402239592

Total number of rows: 37554

Table truncated, full table size 1067 Kbytes.




Supplementary file Size Download File type/resource
GSM5265588_203531420011_R04C01_Grn.idat.gz 385.8 Kb (ftp)(http) IDAT
GSM5265588_203531420011_R04C01_Red.idat.gz 384.0 Kb (ftp)(http) IDAT
Processed data included within Sample table

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