|
| Status |
Public on Apr 27, 2021 |
| Title |
Sample521.Killer whale.204529320101_R04C02 |
| Sample type |
genomic |
| |
|
| Source name |
Skin
|
| Organism |
Orcinus orca |
| Characteristics |
basename: 204529320101_R04C02
canbeusedforagingstudies: yes
Sex: Male
tissue: Skin
|
| Treatment protocol |
Standard Illumina Protocol
|
| Growth protocol |
DNA extracted from tissues
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
genomic DNA was extracted
|
| Label |
Cy3,Cy5
|
| Label protocol |
Standard Illumina Protocol
|
| |
|
| Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridised to the the Beadchip HorvathMammalMethylChip40 using standard Illumina protocol
|
| Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
|
| Description |
genomic DNA methylation from tissue=Skin species=Killer whale
|
| Data processing |
SeSaMe normalization as described in W. Zhou et al 2018. PMID: 30085201
|
| |
|
| Submission date |
Apr 26, 2021 |
| Last update date |
Apr 27, 2021 |
| Contact name |
Steve Horvath |
| E-mail(s) |
shorvath@altoslabs.com
|
| Organization name |
University of California, Los Angeles
|
| Department |
Human Genetics
|
| Lab |
Horvath
|
| Street address |
695 Charles E. Young Drive South, Box 708822
|
| City |
Los Angeles |
| State/province |
CA |
| ZIP/Postal code |
90095-7088 |
| Country |
USA |
| |
|
| Platform ID |
GPL28271 |
| Series (1) |
| GSE173330 |
Methylation clocks for age estimation in toothed whales and dolphins |
|
