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Sample GSM5265907 Query DataSets for GSM5265907
Status Public on Apr 27, 2021
Title Sample845.Bottlenose dolphin.205128010030_R04C01
Sample type genomic
 
Source name Skin
Organism Tursiops truncatus
Characteristics basename: 205128010030_R04C01
canbeusedforagingstudies: yes
Sex: Female
tissue: Skin
Treatment protocol Standard Illumina Protocol
Growth protocol DNA extracted from tissues
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted
Label Cy3,Cy5
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to the the Beadchip HorvathMammalMethylChip40 using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description genomic DNA methylation from tissue=Skin species=Bottlenose dolphin
Data processing SeSaMe normalization as described in W. Zhou et al 2018. PMID: 30085201
 
Submission date Apr 26, 2021
Last update date Apr 27, 2021
Contact name Steve Horvath
E-mail(s) shorvath@altoslabs.com
Organization name University of California, Los Angeles
Department Human Genetics
Lab Horvath
Street address 695 Charles E. Young Drive South, Box 708822
City Los Angeles
State/province CA
ZIP/Postal code 90095-7088
Country USA
 
Platform ID GPL28271
Series (1)
GSE173330 Methylation clocks for age estimation in toothed whales and dolphins

Data table header descriptions
ID_REF
VALUE SeSaMe normalized beta values.

Data table
ID_REF VALUE
cg00000165 0.491232715120062
cg00001209 0.86367424492185
cg00001364 0.917208297042421
cg00001582 0.0571845004404863
cg00002920 0.7650928211257
cg00003994 0.037314242950866
cg00004555 0.0968263254116105
cg00005112 0.812046695508445
cg00005271 0.975583794049077
cg00006213 0.914544374236123
cg00008998 0.454478840413749
cg00009248 0.0410175442878193
cg00009319 0.906338317956262
cg00010445 0.360415696110857
cg00010903 0.954757348172279
cg00010926 0.890301878799346
cg00010977 0.925313459280558
cg00012521 0.946044196557694
cg00012879 0.758916986258435
cg00013189 0.379390285369375

Total number of rows: 37554

Table truncated, full table size 1066 Kbytes.




Supplementary file Size Download File type/resource
GSM5265907_205128010030_R04C01_Grn.idat.gz 379.3 Kb (ftp)(http) IDAT
GSM5265907_205128010030_R04C01_Red.idat.gz 380.7 Kb (ftp)(http) IDAT
Processed data included within Sample table

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