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Status |
Public on Dec 31, 2011 |
Title |
total microRNAs in LNCaP cells treated with DHT at 4h |
Sample type |
RNA |
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|
Source name |
LNCaP cell line
|
Organism |
Homo sapiens |
Characteristics |
treatment group: dihydrotestosterone (DHT) at 4h hormone status: androgen-sensitive tissue: prostate cancer cell line: LNCaP
|
Treatment protocol |
Before androgen treatment, the LNCaP cells were cultivated with Phenol Red -free RPMI 1640 (GIBCO/ BRL) supplemented with 10% charcoal-dextran-stripped FBS for 5 days. Then the cells were induced with androgen dihydrotestosterone (DHT), at ultimate concentration 10 nM, which has been proven by pre-experiment to be optimum for LNCaP cell growth (data not shown). The cell response to androgen treatment was analyzed at ten time points — 0h, 20min, 40min, 1h, 2 h, 4 h, 8 h, 16h, 24 h and 48 h, where ‘0h’ refers to cell status before androgen action.
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Growth protocol |
The androgen-sensitive human prostate cancer cell line LNCaP was obtained from ATCC and maintained in RPMI 1640 supplemented with 10% fetal bovine serum (FBS) and penicillin (100 units/ml)-streptomycin (100g/ml) at 37 ℃ in a humidified 5% CO2 cell incubator.
|
Extracted molecule |
total RNA |
Extraction protocol |
For cell samples at each time point, the total RNA was extracted and purified using the RNeasy Mini kit following the manufacturer’s instructions. The isolated RNA was stored at -70℃ for the Illumina microarrays.
|
Label |
biotin
|
Label protocol |
The isolated RNA was stored at -70℃ for the Illumina microarrays.
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|
|
Hybridization protocol |
Standard Illumina hybridization protocol
|
Scan protocol |
Standard Illumina scanning protocol
|
Description |
replicate 1
|
Data processing |
The data were normalised using quantile normalisation with IlluminaGUI in R
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Submission date |
Apr 07, 2010 |
Last update date |
Dec 31, 2011 |
Contact name |
Wenjuan Mo |
E-mail(s) |
041019012@fudan.edu.cn
|
Phone |
021-65100243
|
Fax |
021-65100243
|
Organization name |
Fudan University
|
Department |
Life School
|
Lab |
Genetics national lab
|
Street address |
No. 220 Handan Road
|
City |
Shanghai |
ZIP/Postal code |
200433 |
Country |
China |
|
|
Platform ID |
GPL8933 |
Series (1) |
GSE21245 |
Genome-wide analysis of matched microRNA-mRNA time-course data after androgen injection to prostate cancer LNCaP cell line |
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