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Sample GSM532434 Query DataSets for GSM532434
Status Public on Oct 18, 2010
Title Myeloma-41
Sample type genomic
 
Source name CD138+ bone marrow cells
Organism Homo sapiens
Characteristics tissue: bone marrow
cell type: Multiple myeloma plasma cell
myeloma translocation: t(14;16)
Treatment protocol all cells were derived from patients prior to treatment with chemotherapy
Growth protocol cell lines were grown in RPMI media with 10% FCS
Extracted molecule genomic DNA
Extraction protocol DNA was extracted using the AllPrep protocol (Qiagen)
Label DNP/biotin
Label protocol as per manufacturers (Illumina) instructions
 
Hybridization protocol as per manufacturers (Illumina) instructions
Scan protocol as per manufacturers (Illumina) instructions
Description bisulfite modified genomic DNA
Data processing files were analyzed in GenomeStudio (Illumina) as per manufacturers (Illumina) instructions using the methylation module v1.5.5, and are described as beta values
 
Submission date Apr 12, 2010
Last update date Oct 18, 2010
Contact name Brian A Walker
E-mail(s) brian.walker@icr.ac.uk
Organization name The Institute of Cancer Research
Department Haemato-Oncology Research Unit
Lab Molecular Haematology Team
Street address 15 Cotswold Road
City Sutton
ZIP/Postal code SM2 5NG
Country United Kingdom
 
Platform ID GPL8490
Series (1)
GSE21304 Aberrant global methylation patterns affect the molecular pathogenesis and prognosis of human multiple myeloma

Data table header descriptions
ID_REF
VALUE GenomeStudio (Illumina) beta value

Data table
ID_REF VALUE
cg00000292 0.2139693
cg00002426 0.8514782
cg00003994 0.0376424
cg00005847 0.4161912
cg00006414 0.06080157
cg00007981 0.02592456
cg00008493 0.965437
cg00008713 0.03098373
cg00009407 0.02141328
cg00010193 0.4733149
cg00011459 0.8154034
cg00012199 0.01247166
cg00012386 0.0124737
cg00012792 0.01471936
cg00013618 0.1719883
cg00014085 0.01908862
cg00014837 0.4949168
cg00015770 0.506603
cg00016968 0.8392696
cg00019495 0.04838013

Total number of rows: 27578

Table truncated, full table size 579 Kbytes.




Supplementary data files not provided
Processed data not applicable for this record

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