|
| Status |
Public on May 23, 2021 |
| Title |
Histone ChIP-seq from HEK293 (ENCLB374EJC) |
| Sample type |
SRA |
| |
|
| Source name |
Homo sapiens HEK293 cell line
|
| Organism |
Homo sapiens |
| Characteristics |
antibody: H3K36me3
line: HEK293
biomaterial_type: cell line
description: Embryonic kidney, cells contain Adenovirus 5 DNA
biosample encode accession: ENCBS253HIE (SAMN19193286)
Sex: female
dev stage: embryonic
age: unknown
donor_id: ENCDO000ABF
lab: Peggy Farnham, USC
source: ATCC
health state: unknown
link: ENCBS253HIE at ENCODE; https://www.encodeproject.org/ENCBS253HIE/
link: Derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
general protocol: https://www.encodeproject.org/documents/0612f0bf-3665-47f8-af5d-09aab3d4ca24/@@download/attachment/wgEncodeSydhTfbs.release3.html.pdf
|
| |
|
| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina Genome Analyzer II |
| |
|
| Description |
https://www.encodeproject.org/experiments/ENCSR910LIE/
***************
biological replicate number: 1
technical replicate number: 2
description: H3K36me3 ChIP-seq on human HEK293
experiment encode accession: ENCSR910LIE
assay title: Histone ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR938LXW
encode release date: 2017-06-01
lab: Peggy Farnham, USC
library encode accession: ENCLB374EJC
fragmentation methods: see document
|
| Data processing |
See GSM*_README.txt supplementary file linked below
|
| |
|
| Submission date |
May 22, 2021 |
| Last update date |
May 28, 2021 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL9115 |
| Series (1) |
| GSE175320 |
Histone ChIP-seq from HEK293 (ENCSR910LIE) |
|
| Relations |
| BioSample |
SAMN19193286 |
| SRA |
SRX10976924 |
